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RAFL05-09-D05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00932)

full reading [+] show sequence

Nucleotide sequence: RAFL05-09-D05 - full reading 
AAAGGAAGCG CCTTTTTCTC TCCTCCATCG TAATTCGCAG AGAAGACACA 
CTACATTGAC TGAGAGGGAA CAAACACAAA GCGATGTCGC AACTCTTATC 
GACTCCTCTA ATGGCGGTCA ACTCCAATCC TCGCTTTCTC TCTTCGTCTT 
CAGTACTCGT CACCGGAGGT TTTGCAGTGA AACGGCATGG ATTCGCCTTG 
AAACCGACGA CGAAGACGGT GAAGCTCTTC TCGGTTAAGT CTCGCCAGAC 
GGATTACTTC GAGAAGCAGA GGTTCGGTGA CTCTTCTTCT TCTCCTTCAC 
CTGCTGAAGG ATTGCCTGCT AGATTTTACG TGGGTCATTC GATATACAAA 
GGGAAAGCTG CGTTAACAGT GGACCCAAGA GCACCAGAGT TTGTGGCTTT 
AGACTCTGGA GCTTTCAAGT TGTCAAAAGA TGGTTTCTTA TTGCTCCAGT 
TTGCTCCTTC TGCTGGTGTA CGACAATATG ATTGGAGCAA GAAACAGGTG 
TTCTCATTGT CTGTTACAGA AATTGGAACT CTAGTTAGCC TAGGCCCGAG 
GGAATCTTGT GAATTCTTCC ATGATCCATT CAAGGGGAAA AGTGATGAGG 
GAAAAGTAAG GAAAGTGTTG AAAGTTGAGC CTCTCCCAGA TGGTTCTGGT 
CATTTCTTCA ACCTAAGTGT TCAAAACAAG CTTGTGAATG TGGATGAGAG 
CATTTACATA CCAATTACTC GAGCAGAGTT TGCTGTTCTT ATCTCTGCAT 
TCAATTTTGT CTTGCCTTAC CTTATAGGCT GGCATGCATT TGCAAACTCC 
ATCAAACCAG AAGAGACAAG CCGTGTGAAC AACGCTTCGC CTAACTATGG 
AGGAGACTAT GAATGGAATA GATGATGAAT CTTAGGGCCA TAACAGGAAC 
ATATATCAGA GATCATCCTA CCCTTTTTGT TTTGCTGATA GGTTTCGTCA 
GGATTGATAT ATGTTCGTAG GTAGCAGAAG AGACTAAAAG TAGTTTATTT 
TTTCGTCCTT TTGACCAAAT GTTCAAAAGC CACATATCAT TTCGTGGTAA 
GCGGTTGTAT CTCAAAACAT CAGTCTGATC TTAGTTGTTT TTGATTTAAA 
AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT1G14410.1 [+] show detail - ssDNA-binding transcriptional regulator
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Plant transcription factor 5.7e-67
superfamily ssDNA-binding transcriptional regulator 6.5e-84

See the detailed result >

AT1G14410.1

Model type
Protein coding
Short Description
ssDNA-binding transcriptional regulator
Curator Summary
Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.
Computational Description
WHIRLY 1 (WHY1); FUNCTIONS IN: DNA binding, telomeric DNA binding; INVOLVED IN: negative regulation of telomere maintenance via telomerase, defense response; LOCATED IN: plastid chromosome, chloroplast, nucleoid, telomerase holoenzyme complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT2G02740.2); Has 106 Blast hits to 105 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-09-D05 introduced

  • F01324 - Specific phenotypes were NOT observed.
  • F04601 - Specific phenotypes were NOT observed.
  • F18346 - seed::increased size / seed::increased length
  • F21341 - Specific phenotypes were NOT observed.
  • F25640 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found