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  3. RAFL05-09-D06

RAFL05-09-D06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02481)

full reading [+] show sequence

Nucleotide sequence: RAFL05-09-D06 - full reading 
AAAGAGAATT CTCTCATTTC TTCTTCTTCG CTCAGCTCCG ACAACGAAGG 
GCGAAGAATC TCGCTCCCTC AATTTCGCAT TGCCATCGAT TTTCTTAGAG 
GTTAAAATGG TTGAACAGAC TCAGCACCCC ACGATTCTTC AGAAGGTTTC 
TGGCCAACTC TTGAGCTCGA GTGTTTCTCA GGACATTCGT GGTTATGCTT 
CGGCTTCCAA AAGGCCTGCT ACATACCAGA AACATGCAGC TTACGGAAAC 
TACTCCAATG CTGCATTTCA ATATCCTCTT GTGGCTGCAT CTCAGATTGC 
AACTACTACT TCTCCTGTGT TTGTCCAAGC TCCAGGAGAG AAGGGATTTA 
CTAACTTTGC TATTGATTTC ATGATGGGTG GTGTTTCTGC TGCTGTGTCA 
AAGACTGCTG CTGCTCCCAT TGAGCGTGTC AAGCTTTTGA TTCAAAACCA 
GGATGAGATG CTTAAGGCTG GAAGGCTTAC TGAGCCATAC AAGGGTATTC 
GTGACTGTTT CGGCAGGACA ATTAGGGATG AAGGTATTGG TTCGTTGTGG 
AGAGGAAACA CCGCTAATGT TATCCGTTAC TTCCCCACTC AGGCCTTGAA 
CTTTGCATTC AAAGATTACT TCAAGAGGCT TTTCAACTTC AAGAAAGACA 
AGGATGGCTA CTGGAAGTGG TTTGCTGGTA ACTTGGCATC TGGAGGTGCT 
GCTGGTGCCT CTTCCCTTCT CTTTGTGTAC TCTCTTGACT ATGCACGTAC 
CCGTCTTGCC AATGACTCCA AGTCTGCCAA GAAGGGAGGA GGTGAAAGGC 
AGTTCAATGG TCTTGTTGAT GTCTACAAGA AGACCCTCAA GTCAGATGGT 
ATTGCTGGAC TTTACCGTGG TTTCAACATC TCGTGTGCTG GTATCATTGT 
CTACCGTGGT CTCTACTTTG GACTGTACGA CTCTGTGAAG CCTGTCCTCC 
TCACTGGAGA CCTGCAGGAC AGTTTCTTCG CTAGTTTTGC TCTTGGATGG 
CTCATCACCA ATGGTGCGGG TCTTGCGTCG TACCCGATTG ACACGGTTAG 
AAGAAGAATG ATGATGACAT CAGGTGAAGC GGTGAAGTAC AAGAGCTCAT 
TTGATGCGTT CTCACAGATC GTGAAGAAGG AAGGAGCCAA GTCTCTGTTC 
AAGGGTGCGG GTGCCAACAT CCTGCGTGCC GTTGCAGGTG CTGGTGTGCT 
TGCTGGCTAC GACAAGCTGC AGTTAATCGT CTTCGGCAAG AAGTATGGAT 
CTGGAGGTGC CTAAGTACCA CCAAATCCCG CAGTCATTAA GCTTCGGCTT 
TTGTTTTTTT CTCCATTTTT TTTGCAGTTT CAGATTTCTT TTATAAAAAA 
GATGTTGATG AAATCATTTC CCCATAAAAT TAGAGAGGAG CAAGGGGAAA 
TATTATCTGT TCGACGATAA GGTTTTTGTT ATATGGAATA AATTTTGTAA 
AAAAAAAAAA AAAGAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT5G13490.1 [+] show detail - ADP/ATP carrier 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Mitochondrial substrate carrier 4.9e-81
FPrintScan Mitochondrial carrier protein 1.1e-67
FPrintScan Mitochondrial carrier protein 1.1e-67
FPrintScan Mitochondrial carrier protein 1.1e-67
FPrintScan Mitochondrial carrier protein 1.1e-67
FPrintScan Mitochondrial carrier protein 1.1e-67
FPrintScan Mitochondrial carrier protein 1.1e-67
FPrintScan Adenine nucleotide translocator 1 1.1e-65
FPrintScan Adenine nucleotide translocator 1 1.1e-65
FPrintScan Adenine nucleotide translocator 1 1.1e-65
FPrintScan Adenine nucleotide translocator 1 1.1e-65
FPrintScan Adenine nucleotide translocator 1 1.1e-65
FPrintScan Adenine nucleotide translocator 1 1.1e-65
FPrintScan Adenine nucleotide translocator 1 1.1e-65
ProfileScan Mitochondrial substrate/solute carrier 24.68
ProfileScan Mitochondrial substrate/solute carrier 22.041
ProfileScan Mitochondrial substrate/solute carrier 19.188
HMMPanther ADP,ATP CARRIER PROTEIN 4.5e-186
HMMPanther Mitochondrial substrate carrier 4.5e-186
HMMPfam Mitochondrial substrate/solute carrier 2.4e-24
HMMPfam Mitochondrial substrate/solute carrier 4.2e-21
HMMPfam Mitochondrial substrate/solute carrier 2.4e-16

See the detailed result >

AT5G13490.1

Model type
Protein coding
Short Description
ADP/ATP carrier 2
Curator Summary
Encodes mitochondrial ADP/ATP carrier
Computational Description
ADP/ATP carrier 2 (AAC2); FUNCTIONS IN: protein binding, binding, copper ion binding, ATP:ADP antiporter activity; INVOLVED IN: transport, purine nucleotide transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ADP/ATP carrier 1 (TAIR:AT3G08580.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-09-D06 introduced

  • F07203 - rosette leaf::epinastic / rosette leaf::abnormal / cauline leaf::present in fewer numbers in organism / sporophyte vegetative stage::decreased speed / rosette leaf::decreased size / rosette leaf::abnormal / cauline leaf::decreased size / stem::decreased thickness / stem::desaturated green / cauline leaf::desaturated green / cauline leaf::abnormal / flower::abnormal / fruit::abnormal / stem::abnormal / fruit::abnormal

Mutant lines with disrupted or induced

2 mutant lines found