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RAFL05-09-F21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01159)

full reading [+] show sequence

Nucleotide sequence: RAFL05-09-F21 - full reading 
GACGTTTTTG TTCTTCGAAA TTCAAATTCA CCCAGAAAAA ATCTCAATCC 
GCGATGGTTG AAGAATCAGC TTCTGCGTCG GAAGCTTCGG TGATACAAAC 
CCTAACCGAG CCGGCGACGG AGATTGCGCA AACCCTAGAA CCTAACCTAG 
CCTCAATCGA AGCCACCGTC GAATCGGTTG TTCAGGGAGG CACTGAATCG 
ACTTGTAACA ACGACGCTAA TAACAACAAC GCCGCTGACA GTGCTGCTAC 
TGAGGTTTGT GATGAGGAGC GTGAGAAGAC GCTTGAGTTC GCTGAGGAAT 
TGACGGAGAA AGGCTCTGTG TTTTTGAAAG AGAACGATTT CGCTGAAGCC 
GTCGATTGCT TCAGCCGTGC TCTCGAAATC AGGGTTGCAC ATTATGGTGA 
ACTTGATGCT GAGTGTATAA ACGCATACTA TCGATATGGA TTAGCTCTCC 
TGGCAAAGGC TCAAGCTGAA GCTGATCCAC TTGGGAACAT GCCTAAGAAA 
GAAGGTGAAG TTCAGCAAGA GTCCAGCAAT GGTGAATCGC TGGCTCCTTC 
TGTTGTTTCA GGTGACCCAG AGAGACAAGG GAGTTCAAGT GGGCAAGAAG 
GTTCTGGTGG TAAAGACCAA GGAGAGGATG GTGAAGATTG TCAAGATGAT 
GACCTATCTG ATGCTGATGG TGATGCTGAT GAAGATGAGT CTGATTTGGA 
TATGGCCTGG AAAATGCTGG ACATTGCTAG GGTTATTACT GACAAACAGT 
CTACTGAGAC AATGGAAAAA GTGGATATAC TCTGTTCGCT TGCTGAAGTG 
TCCTTGGAAA GAGAGGACAT TGAGTCTTCC CTGTCTGACT ACAAGAATGC 
ATTATCCATC TTAGAGAGAC TGGTTGAGCC CGACAGTCGA CGCACAGCTG 
AATTAAACTT CCGCATCTGC ATTTGTCTTG AGACTGGATG TCAGCCTAAG 
GAAGCAATAC CATATTGTCA AAAAGCTTTG TTAATATGCA AAGCTCGGAT 
GGAGAGGCTC AGTAATGAAA TCAAAGGTGC ATCTGGTTCA GCAACTTCCT 
CAACCGTCTC TGAAATAGAT GAAGGCATCC AACAATCATC CAATGTTCCT 
TACATTGATA AATCTGCTTC AGACAAAGAA GTTGAGATCG GAGACTTAGC 
TGGTCTCGCT GAAGATCTAG AAAAGAAGCT TGAGGATTTA AAACAACAAG 
CAGAGAACCC AAAGCAGGTT CTTGCTGAGC TAATGGGCAT GGTATCAGCT 
AAGCCAAATG CCAGTGACAA GGTTGTTCCT GCTGCTGCTG AAATGAGCTC 
TTCTAGGATG GGAACTGTGA ACACCAATTT CGGGAAAGAT TTAGAGTCGC 
CTACAGTCTC AACCGCTCAT ACCGGTGCAG CAGGAGGAGG AGCAGCATCA 
GGTGTTACTC ACTTGGGTGT TGTTGGAAGA GGAGTGAAGA GAGTTTTGAT 
GAATACAACC TCGATTGAAT CAAGTGCATC AAAGAAACCA GCTCTAGAGT 
TTTCAGACAA AGCAGATGGC AACTCCTCTT GAAACCGGAA AAAGGTATAA 
AAATTCCTGT TACTAGTGAA GTATCTAACC TAAGAAAACT GAGAAAAACA 
TTTGGTATCT TCCTCATGAA TCTTCCAAGA CTAGATTTTC AGGTTCATGT 
TTTGTAATGG AGTCCGTACT TGCTACTTTT TTAAATCGCT GAGATATTTT 
TTATTAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT4G37210.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily TPR-like 0.0000000000058
Gene3D Tetratricopeptide-like helical 0.000046
ProfileScan Tetratricopeptide repeat 9.883
ProfileScan Tetratricopeptide repeat 6.195
ProfileScan Tetratricopeptide repeat-containing 9.867
HMMSmart Tetratricopeptide repeat 0.003
HMMSmart Tetratricopeptide repeat 11
HMMSmart Tetratricopeptide repeat 86
Coil coiled-coil 0
Coil coiled-coil 0
HMMPanther HISTONE BINDING PROTEIN-RELATED 1.7e-144
HMMPanther NUCLEAR AUTOANTIGENIC SPERM PROTEIN (NASP)-RE 1.7e-144
HMMPfam Tetratricopeptide TPR-1 0.000043

See the detailed result >

AT4G37210.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-09-F21 introduced

  • F19903 - rosette leaf::desaturated green / cauline leaf::increased size / fruit::decreased length / stem::abnormal

Mutant lines with disrupted or induced

3 mutant lines found