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  3. RAFL05-09-G04

RAFL05-09-G04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07261)

full reading [+] show sequence

Nucleotide sequence: RAFL05-09-G04 - full reading 
AAGAAGCTAT TGGATCGCTG ACAGATAATC CGATCAGATT CAGAGAGTTT 
TATCGATCAG ATCATTTTTT CTCAATGACG AAAAAGGCGG TGCTTATTGG 
GATCAATTAC CCAGGAACCA AGGCGGAGTT ACGGGGATGC GTCAACGATG 
TTCGTCGTAT GTACAAATGT CTCGTTGAAC GGTACGGCTT CTCCGAGGAG 
AACATCACCG TTCTCATCGA CACCGATGAA TCCTCTACTC AGCCTACTGG 
CAAGAACATC CGCCGCGCGC TTGCTGATCT CGTCGAATCT GCCGATTCCG 
GCGACGTTCT TGTCGTTCAT TACAGTGGAC ACGGTACGAG GTTGCCGGCT 
GAGACTGGTG AAGACGATGA CACTGGTTTC GACGAGTGTA TTGTTCCTTG 
CGACATGAAT CTGATTACTG ATGATGATTT TAGAGATCTT GTGGACAAGG 
TTCCTCCAGG TTGCAGAATG ACAATCATTT CAGACTCTTG TCACAGTGGT 
GGCCTAATCG ACGAAGCCAA GGAGCAGATT GGAGAGAGCA CTAAGAAAGA 
AGCCGAGGAC GAAGATGAAT CTGAAGAATC TTCTTCAAGA TTCGGGTTTA 
GGAAGTTCTT GCGCAGCAAA GTGGAAGGCG CCATCGAGTC TCGAGGGTTT 
CACATTGGAG GGAACAAGAA GGATGAAGAT GAGGCGGAAG AAATCGAGAC 
TAAGGAGATT GAGCTTGAAG ACGGAGAAAC GATCCATGCC AAAGACAAAT 
CTCTTCCTCT GCAGACCTTG ATTGATATTC TCAAGCAGCA AACAGGGAAT 
GATAATATCG AAGTTGGGAA AATCAGGCCA AGCCTTTTTG ATGCGTTTGG 
TGATGATTCG AGCCCGAAAG TGAAGAAGTT TATGAAAGTG ATCTTAGGTA 
AGCTTCAGGC TGGAAATGGA GAAGAAGGTG GATTAATGGG AATGCTTGGC 
AAATTGGCTT CAGGGTTTCT TGAGGGTAAA CTAAACGATG AAGACTATGT 
GAAACCCGCT ATGCAGACAC ACGTTGGGAG TAAAGAAGAG GTTTATGCTG 
GTGGATCAAG AGGTTCGGTT CCGCTTCCAG ACAGCGGGAT ACTGATCAGC 
GGTTGCCAAA CCGATCAGAC CTCTGCTGAT GCGACTCCAG CGGGGAAACC 
AACTGAGGCT TATGGAGCGA TGAGCAATTC GATACAGACG ATATTGGAGG 
AGACAGACGG TGAGATATCA AACAGAGAAA TGGTTACAAG GGCTAGGAAG 
GCATTGAAGA AGCAAGGGTT TACTCAGCAG CCAGGTTTGT ATTGCCATGA 
TGGTTATGCC AACGCTCCTT TCATCTGTTG AAAACAGAGG TTTTATTGAA 
TGTTTTTTAC TACGTACGAC ACGTTGATTG AAGTTTCTGG TCGGAAAAAT 
AAGCCTGTTT TTTTTTTTTG CTGTTTGATG GCATTTATGT AATTTACAAG 
TTATGTGTGT TGTGTTCTGT GAAACACTAA AATTCTTCTT GTTTTATTGA 
GATCTATTAT GTTGGTTGTG AAATTATTTT TTGTTTTTCT TTTCTTGTTA 
ACTCTCTGTA TTCTGCACAT CAATAAGAAA AAGTTTTTTT TAACGGTAAA 
AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT1G79340.1 [+] show detail - metacaspase 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPfam Peptidase C14, caspase catalytic 2.4e-101

See the detailed result >

AT1G79340.1

Model type
Protein coding
Short Description
metacaspase 4
Computational Description
metacaspase 4 (MC4); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 5 (TAIR:AT1G79330.1); Has 1195 Blast hits to 1161 proteins in 285 species: Archae - 6; Bacteria - 340; Metazoa - 3; Fungi - 271; Plants - 332; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-09-G04 introduced

  • F13016 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::abnormal / stem::present in fewer numbers in organism / stem::abnormal

Mutant lines with disrupted or induced

3 mutant lines found