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RAFL05-09-K18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01045)

full reading [+] show sequence

Nucleotide sequence: RAFL05-09-K18 - full reading 
AACAAAAAAG AGAGAGAGAA CCTAAAAAGA AGAGAAGAGA AAGAGAGATC 
CGAAATGTCG GTGACATCAA CGGTGGAGGA GAACCACCAG AAAAATCCAT 
CAACGCCGGC GGCGGTGGAG GAGAAGAAGA AGAGGAGATG GGTGTTTTGG 
GATAGAAGGT GGAGGAGATT AGATTATGTG AAATTCTCAG CTTCTTTCAC 
TGTTCATTCT CTTGCTCTCT TGGCTCCGTT TTATTTCACT TGGTCGGCTC 
TTTGGGTTAC GTTTTTGTTT TACACCATCG GTGGTCTTGG TATCACCGTC 
TCTTATCATC GCAACTTGGC TCACCGGAGT TTCAAAGTCC CTAAATGGCT 
TGAGTATCTC TTAGCCTATT GTGCCCTTCT CGCTATTCAG GGAGATCCGA 
TTGATTGGGT GAGTACACAT CGTTACCATC ACCAGTTCAC GGATTCAGAA 
CGTGATCCAC ATAGTCCTAA GGAAGGTTTT TGGTTTAGTC ATCTTCTTTG 
GATCTATGAC TCTGCCTATC TTGTTTCAAA GTGTGGAAGA AGAGCAAACG 
TGGAGGATTT GAAGAGGCAA TGGTTTTATA GGTTTCTTCA GAAAACAGTG 
CTATTTCACA TTTTAGGATT GGGTTTCTTT CTCTTCTACC TTGGTGGCAT 
GTCCTTCGTT ACTTGGGGAA TGGGGGTAGG AGCAGCATTG GAAGTGCACG 
TGACTTGCCT CATAAATTCA CTCTGCCATA TTTGGGGCAC TCGAACTTGG 
AAGACCAATG ACACTTCTCG TAATGTTTGG TGGTTATCGG TATTTTCATT 
TGGAGAGAGT TGGCACAACA ATCATCATGC GTTCGAGTCA TCGGCTAGAC 
AAGGACTTGA ATGGTGGCAA ATAGACATTT CGTGGTACAT TGTTCGGTTT 
TTCGAAATTA TCGGTTTAGC GACCGATGTG AAAGTGCCAA CGGAGGCTCA 
ACGACGTCGT ATGGCTATAG TTCGTTGATG GAAATTGCGG GAAGAGCATA 
GAAAAAGGGA TCTATTCTAT GTAATTAGAA TAATTTCTAA TCCTAAAAGA 
GAGTTATTGT TTTATTTTCT TTATTACTAC TTTTGAAGTT TTGGGTTAAC 
GCAAAGGACG TTTCCGATGT GTTTTGGTGT TGGACCAAGT TGATTAAGAT 
ATTTGTCGTA ATTGGTACTT ATATATAAAA TCTTAGTGGG GACAATTAAT 
ACGTTAATTA CGGTCTCTAT GTGAGACTTA TTTTAATAAA AAAAAAAAAA 
AAA

Gene models with high sequence identity

  1. AT2G31360.1 [+] show detail - 16:0delta9 desaturase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Fatty acid desaturase, type 1 1.2e-19
HMMPanther DELTA 9 DESATURASE 8.5e-187
HMMPanther ACYL-COA DESATURASE 8.5e-187
FPrintScan Fatty acid desaturase, type 1, core 4e-27
FPrintScan Fatty acid desaturase, type 1, core 4e-27
FPrintScan Fatty acid desaturase, type 1, core 4e-27
FPrintScan Fatty acid desaturase, type 1, core 4e-27
FPrintScan Fatty acid desaturase, type 1, core 4e-27

See the detailed result >

AT2G31360.1

Model type
Protein coding
Short Description
16:0delta9 desaturase 2
Curator Summary
homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature.
Computational Description
16:0delta9 desaturase 2 (DS2); FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: delta 9 desaturase 1 (TAIR:AT1G06080.1); Has 3454 Blast hits to 3454 proteins in 832 species: Archae - 0; Bacteria - 1553; Metazoa - 797; Fungi - 236; Plants - 106; Viruses - 4; Other Eukaryotes - 758 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-09-K18 introduced

  • F15737 - rosette leaf::dark green / stem::abnormal / cauline leaf::epinastic / cauline leaf::abnormal / stem::present in fewer numbers in organism / rosette leaf::dark green / rosette leaf::increased width

Mutant lines with disrupted or induced

2 mutant lines found