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Full-length cDNAs
RAFL05-09-N08

RAFL05-09-N08

RIKEN Arabidopsis Full-length cDNAs

CTCTCTTTTT GCTATTATAA AGAAAAAGAT TCATTCTCCC ACCATTGAGG 
TTTAACTTAT ACAAACAGAT CTTTTTGAAA TTGGATTCAT CTAAGAAGCA 
GACTCTGTTT TCATGGCTGT TTACAATACC AAACTCTGTT TGGCCTCTGT 
TTTCTTGCTC TTAGGGCTTC TCTTGGCTTT TGACTTGAAG GGTATAGAAG 
CAGAAAGTCT TACCAAACAG AAACTGGACT CGAAGATACT TCAGGATGAG 
ATTGTGAAGA AAGTCAACGA AAACCCAAAC GCTGGATGGA AAGCTGCTAT 
AAATGATCGA TTTTCAAACG CCACTGTTGC AGAGTTTAAG CGTCTTCTCG 
GTGTTAAACC AACACCAAAG AAGCATTTCT TAGGTGTTCC TATTGTGAGC 
CATGATCCAT CTTTGAAGCT ACCTAAAGCT TTTGATGCTA GAACTGCTTG 
GCCACAGTGC ACTAGTATTG GAAACATCTT AGATCAGGGA CATTGTGGTT 
CTTGCTGGGC ATTTGGTGCT GTTGAATCAC TATCAGATAG ATTCTGTATC 
CAATTTGGCA TGAACATTTC TTTATCAGTA AATGATCTCC TAGCTTGTTG 
TGGATTCCGT TGTGGTGATG GTTGTGACGG TGGCTATCCA ATTGCTGCTT 
GGCAATACTT TTCGTATAGC GGTGTTGTCA CAGAAGAGTG TGATCCATAC 
TTTGATAATA CCGGATGCTC TCACCCGGGT TGCGAACCGG CATATCCTAC 
ACCGAAATGT TCGAGGAAAT GCGTTAGCGA CAACAAACTA TGGAGCGAGT 
CGAAGCATTA CAGTGTTAGT ACATACACTG TGAAATCTAA TCCACAAGAT 
ATCATGGCAG AGGTTTATAA GAATGGACCT GTTGAAGTCT CTTTTACCGT 
TTATGAGGAT TTTGCTCATT ACAAATCTGG AGTCTATAAG CACATAACAG 
GTTCTAACAT TGGAGGTCAT GCTGTTAAAC TTATTGGTTG GGGAACTAGC 
AGTGAAGGAG AAGATTATTG GTTGATGGCA AATCAATGGA ACAGAGGCTG 
GGGTGATGAT GGTTATTTCA TGATAAGGAG AGGAACTAAT GAATGTGGAA 
TTGAAGATGA ACCAGTAGCT GGTTTGCCTT CAAGCAAGAA TGTGTTTAGG 
GTTGATACCG GTTCGAATGA TCTTCCGGTT GCATCGGTTT AAGATCAAAG 
ATGGAAATGT TGCATCGGTT TAATATCAAA GATGAAAAGT TGTTTGTAAG 
ATATATATGT TATGGTTGTT GTTTCCAGTA AAAGATTCCG GTGACTAGAA 
ATTGTTTTCT GGTTGGCTGT GAAAATGTTA TACAAATAAA CACTTCAACT 
TAAGCAATAT AATATCATTT CTACTAAAAA AAAAAAAAAA A

Gene models with high sequence identity

AT4G01610.1 [+] show detail - Cysteine proteinases superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Peptidase C1A, papain C-terminal	4e-66
HMMPfam	Peptidase C1A, propeptide	7.3e-15
HMMPanther	Peptidase C1A, cathepsin B	3.7e-198
HMMPanther	Peptidase C1A, papain	3.7e-198
Gene3D	no description	1.4e-90
PatternScan	Peptidase, cysteine peptidase active site	0
PatternScan	Peptidase, cysteine peptidase active site	0
FPrintScan	Peptidase C1A, papain C-terminal	4.9e-08
FPrintScan	Peptidase C1A, papain C-terminal	4.9e-08
FPrintScan	Peptidase C1A, papain C-terminal	4.9e-08
HMMSmart	Peptidase C1A, papain C-terminal	1.3e-87
superfamily	Cysteine proteinases	3.6e-102

See the detailed result >

AT4G01610.1

Model type: Protein coding
Short Description: Cysteine proteinases superfamily protein
Computational Description: Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1); Has 7486 Blast hits to 7443 proteins in 692 species: Archae - 63; Bacteria - 158; Metazoa - 3254; Fungi - 4; Plants - 1745; Viruses - 146; Other Eukaryotes - 2116 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL05-09-N08 introduced

F09834 - Specific phenotypes were NOT observed.
F12001 - Specific phenotypes were NOT observed.
F29528 - Specific phenotypes were NOT observed.
F30138 - rosette leaf::present in fewer numbers in organism / cauline leaf::abnormal / stem::abnormal / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased width / stem internode::decreased length

Mutant lines with disrupted or induced

5 mutant lines found