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  3. RAFL05-09-N08

RAFL05-09-N08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01083)

full reading [+] show sequence

Nucleotide sequence: RAFL05-09-N08 - full reading
CTCTCTTTTT GCTATTATAA AGAAAAAGAT TCATTCTCCC ACCATTGAGG 
TTTAACTTAT ACAAACAGAT CTTTTTGAAA TTGGATTCAT CTAAGAAGCA
GACTCTGTTT TCATGGCTGT TTACAATACC AAACTCTGTT TGGCCTCTGT
TTTCTTGCTC TTAGGGCTTC TCTTGGCTTT TGACTTGAAG GGTATAGAAG
CAGAAAGTCT TACCAAACAG AAACTGGACT CGAAGATACT TCAGGATGAG
ATTGTGAAGA AAGTCAACGA AAACCCAAAC GCTGGATGGA AAGCTGCTAT
AAATGATCGA TTTTCAAACG CCACTGTTGC AGAGTTTAAG CGTCTTCTCG
GTGTTAAACC AACACCAAAG AAGCATTTCT TAGGTGTTCC TATTGTGAGC
CATGATCCAT CTTTGAAGCT ACCTAAAGCT TTTGATGCTA GAACTGCTTG
GCCACAGTGC ACTAGTATTG GAAACATCTT AGATCAGGGA CATTGTGGTT
CTTGCTGGGC ATTTGGTGCT GTTGAATCAC TATCAGATAG ATTCTGTATC
CAATTTGGCA TGAACATTTC TTTATCAGTA AATGATCTCC TAGCTTGTTG
TGGATTCCGT TGTGGTGATG GTTGTGACGG TGGCTATCCA ATTGCTGCTT
GGCAATACTT TTCGTATAGC GGTGTTGTCA CAGAAGAGTG TGATCCATAC
TTTGATAATA CCGGATGCTC TCACCCGGGT TGCGAACCGG CATATCCTAC
ACCGAAATGT TCGAGGAAAT GCGTTAGCGA CAACAAACTA TGGAGCGAGT
CGAAGCATTA CAGTGTTAGT ACATACACTG TGAAATCTAA TCCACAAGAT
ATCATGGCAG AGGTTTATAA GAATGGACCT GTTGAAGTCT CTTTTACCGT
TTATGAGGAT TTTGCTCATT ACAAATCTGG AGTCTATAAG CACATAACAG
GTTCTAACAT TGGAGGTCAT GCTGTTAAAC TTATTGGTTG GGGAACTAGC
AGTGAAGGAG AAGATTATTG GTTGATGGCA AATCAATGGA ACAGAGGCTG
GGGTGATGAT GGTTATTTCA TGATAAGGAG AGGAACTAAT GAATGTGGAA
TTGAAGATGA ACCAGTAGCT GGTTTGCCTT CAAGCAAGAA TGTGTTTAGG
GTTGATACCG GTTCGAATGA TCTTCCGGTT GCATCGGTTT AAGATCAAAG
ATGGAAATGT TGCATCGGTT TAATATCAAA GATGAAAAGT TGTTTGTAAG
ATATATATGT TATGGTTGTT GTTTCCAGTA AAAGATTCCG GTGACTAGAA
ATTGTTTTCT GGTTGGCTGT GAAAATGTTA TACAAATAAA CACTTCAACT
TAAGCAATAT AATATCATTT CTACTAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT4G01610.1 [+] show detail - Cysteine proteinases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Peptidase C1A, papain C-terminal 4e-66
HMMPfam Peptidase C1A, propeptide 7.3e-15
HMMPanther Peptidase C1A, cathepsin B 3.7e-198
HMMPanther Peptidase C1A, papain 3.7e-198
Gene3D no description 1.4e-90
PatternScan Peptidase, cysteine peptidase active site 0
PatternScan Peptidase, cysteine peptidase active site 0
FPrintScan Peptidase C1A, papain C-terminal 4.9e-08
FPrintScan Peptidase C1A, papain C-terminal 4.9e-08
FPrintScan Peptidase C1A, papain C-terminal 4.9e-08
HMMSmart Peptidase C1A, papain C-terminal 1.3e-87
superfamily Cysteine proteinases 3.6e-102

See the detailed result >

AT4G01610.1

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Computational Description
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1); Has 7486 Blast hits to 7443 proteins in 692 species: Archae - 63; Bacteria - 158; Metazoa - 3254; Fungi - 4; Plants - 1745; Viruses - 146; Other Eukaryotes - 2116 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-09-N08 introduced

  • F09834 - Specific phenotypes were NOT observed.
  • F12001 - Specific phenotypes were NOT observed.
  • F29528 - Specific phenotypes were NOT observed.
  • F30138 - rosette leaf::present in fewer numbers in organism / cauline leaf::abnormal / stem::abnormal / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased width / stem internode::decreased length

Mutant lines with disrupted or induced

5 mutant lines found