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  3. RAFL05-10-A05

RAFL05-10-A05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00897)

full reading [+] show sequence

Nucleotide sequence: RAFL05-10-A05 - full reading 
ACAAACGGCA GAGCATGTCG AATCGAGAAC ATCTCCGAGA CTTGGCTTAT 
CTCTCCGACG ATCTTCGTAT AAAACTTAGT CCGGCGGGAA ATCGACTTTC 
AAATTCGCAG GATTCTGTCG ATATTCTTGT ATAGTTGCGA GTCTACAAGA 
TTCTTCTTCA CCATCTCTGT TAATTTTTCC CTAATTCTTT CATCTGAGTG 
AAGGAAATGG ATCCTGAAGC TGTGAAGGAG TTTATACGAA GGGAAGTTCC 
AGATTGGGAC GATGAGGTGG TGGCGATGGC TAGATTCAAG GCGTTTAGTG 
GTCAGAGGTC CGATTGGGGA CTTAAATTTC AGTTTTGGCG TGATTTGATC 
ATCAAGGTTT CGCGTCAGTT TGGGTTGTTC ATCATTGATC CTGTCCAGGT 
GAAGAAGGCG TGGTTTGATC GAGGAGGAAT GACGCCTTTA TGCATTGATG 
ATGTTGTGTT ATTGATGCAT AGTGAAGGTG ATGTTGTGCG GATTAGTGAT 
CTCGATGATC CCGGTAGTGG TCGTATTGCT CGTTTATTGA GGACAGTGAA 
GAACTTAATG GTTCAACAGC CAGTGAAGCA GGAAGAGATT CTGGAAAATA 
CACTTGTTCT TGTTCCACTC TTGAAGGAGA AGGCGGCTGA CGTGGTGAAG 
ATATTATCTG AGGGACACTG GACTTCTACT TGTGTTGTCA CGCTGAAGAA 
GTTTCGGAAT TTGTGCAACG GTTCGAATGA GGCTTCAGCT GTTTTGAGTC 
ACTTGTCAGG GTGTGGAAAA GCGCATAAAA TCTCTATCAA TCGGGGAGAA 
CTGATTGAGG GTGTTAAGGT GTCCTTTTCA CAAACAGCAC TTCCCGGTAT 
CTCAACTTTA GACTGTGATA TTCTGCACTT GCTAAGGACT ACAGAAAAGC 
TCCAAGATCA ACTTGAAGTG ATGGACCAAC GTTGTGAAAA GTCAAAGAAA 
TCAGCGCTGG CATCTCTAAA GTCTGGACAC AGGAAAGTTG CTCTAAGGCA 
TGCAAGGGAA TTGAAGGTGG TGACTGAGAG CAGAGAAAAA TGCACGTCAC 
TTCTGAACAG AGTAGAAGAA GTGTTGAACA CTATAGCGGA TTCCGAATCT 
ACGAAAATGG TCTCAGAAGC AATTAAAACT GGAGCTAGGG TTATGAAGGA 
CATCAAGATC AGTGCAGATG ATGTTCATGA CTATCTAGAA GAACTTGAGG 
AAACTATTGA ATCACAGAAG CAAGTCGAAA AAGCTCTCGA ATCAGCTCCA 
TATCCAGATA TTGATGATGA AGATATCGAA GAAGAATTAC TGGAACTAGA 
GATGGACCTT GAAAGTGAAA GTTCTCAGGT CCTACCAGCG ACTTCAGATA 
CTGCAGATTC ACTGACTGAG ATGTTCTCAG AGCTTAAACT TGGCAAGACG 
AAACAAACAT TGGATGAGCA AGCTACTGAG CCAGCTCAGA TGAAAGATAG 
CGGAAAAAAG ATTCTTGAAG CAGCATAGCT GAACAATGCA TCTTCATTGC 
GGTGCGATCT CTTCTCTTCC TGTTGTTCTT AGTGAAGAAA TACACTCAGT 
ATCATATAAA TAGAATAGAA CCGGGTAAAG TGAGTTGAGT ATTTGTATGC 
TATGCCTCTT GTTTGGATTC TAGAAACAAT AGCTTCACTC CATTGTATAA 
AGTCAGCAGC TTGTTTCATA AACAGAGAGG AACGTCGAGT TATGATTTTT 
ATCACTCCGA TAGTGTTCGA TAATTTATTA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT3G62080.1 [+] show detail - SNF7 family protein
    E-value: 0; Score: 99.88

 

InterPro Scan Digest

Program Description E-value
HMMPfam Snf7 1.1e-15
HMMPanther SNF7 - RELATED 7.6e-71
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT3G62080.1

Model type
Protein coding
Short Description
SNF7 family protein
Computational Description
SNF7 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-10-A05 introduced

  • F30009 - seed::increased size

Mutant lines with disrupted or induced

2 mutant lines found