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Full-length cDNAs
RAFL05-10-A17

RAFL05-10-A17

RIKEN Arabidopsis Full-length cDNAs

CCCGAAGTTT TCGACAGATC AACTGTTTTC TTCATTACGT GTTCTTCAAT 
GGCGTCACTT CACTGATTCT ATTCCTATCA AACCCACTTA CCCATTCCCT 
TTTATATGCA CAAATTCTCA TAAAGTTTTC AATTTTATTC CATTTTTCTC 
GGAAGCCATG GAAGCTGCTA ATGAGCCTGT TAATGGCGGA TCCGTACAGA 
TCCGAACAGA GAACAACGAA AGACGAAAGC TTCCTAATTT CTTACAAAGC 
GTCAACATGA AATACGTCAA GCTAGGTTAT CATTACCTCA TTACTCATCT 
CTTCAAGCTC TGTTTGGTTC CATTAATGGC GGTTTTAGTC ACAGAGATCT 
CTCGATTAAC AACAGACGAT CTTTACCAGA TTTGGCTTCA TCTCCAATAC 
AATCTCGTTG CTTTCATCTT TCTCTCTGCT TTAGCTATCT TTGGCTCCAC 
CGTTTACATC ATGAGTCGTC CCAGATCTGT TTATCTCGTT GATTACTCTT 
GTTATCTTCC TCCGGAGAGT CTTCAGGTTA AGTATCAGAA GTTTATGGAT 
CATTCTAAGT TGATTGAAGA TTTCAATGAG TCATCTTTAG AGTTTCAGAG 
GAAGATTCTT GAACGTTCTG GTTTAGGAGA AGAGACTTAT CTCCCTGAAG 
CTTTACATTG TATCCCTCCG AGGCCTACGA TGATGGCGGC TCGTGAGGAA 
TCTGAGCAGG TAATGTTTGG TGCTCTTGAT AAGCTTTTCG AGAATACCAA 
GATTAACCCT AGGGATATTG GTGTGTTGGT TGTGAATTGT AGCTTGTTTA 
ATCCTACACC TTCGTTGTCA GCTATGATTG TTAACAAGTA TAAGCTTAGA 
GGGAATGTTA AGAGTTTTAA CCTTGGTGGA ATGGGGTGTA GTGCTGGTGT 
TATCTCTATC GATTTAGCTA AAGATATGTT GCAAGTTCAT AGGAATACTT 
ATGCTGTTGT GGTTAGTACT GAGAACATTA CTCAGAATTG GTATTTTGGG 
AATAAGAAGG CTATGTTGAT TCCGAATTGT TTGTTTCGTG TTGGTGGTTC 
GGCGATTTTG TTGTCGAACA AGGGGAAAGA TCGTAGACGG TCTAAGTATA 
AGCTTGTTCA TACCGTTAGG ACTCATAAAG GAGCTGTTGA GAAGGCTTTC 
AACTGTGTTT ACCAAGAGCA AGATGATAAT GGGAAGACCG GGGTTTCGTT 
GTCGAAAGAT CTTATGGCTA TAGCTGGGGA AGCTCTTAAG GCGAATATCA 
CTACTTTAGG TCCTTTGGTT CTTCCTATAA GTGAGCAGAT TCTGTTTTTC 
ATGACTTTGG TTACGAAGAA ACTGTTTAAC TCGAAGCTGA AGCCGTATAT 
TCCGGATTTC AAGCTTGCGT TTGATCATTT CTGTATCCAT GCTGGTGGTA 
GAGCTGTGAT TGATGAGCTT GAGAAGAATC TGCAGCTTTC GCAGACTCAT 
GTCGAGGCAT CCAGAATGAC ACTGCACAGA TTTGGAAACA CTTCTTCGAG 
CTCGATTTGG TATGAACTGG CTTACATAGA GGCTAAAGGT AGGATGAAGA 
AAGGAAACCG GGTTTGGCAG ATTGCTTTTG GAAGTGGGTT TAAGTGTAAC 
AGTGCAGTTT TGGGTGGCTC TAAACAATGT CAAGCCTTCG GTTAGTAGTC 
CGTGGGAACA CTGCATCGAC CGATATCCGG TTAAGCTCGA CTTCTGATTT 
AATGAAAAAC CATTTGTTTG GTTAGTCCTA GTCTTACTAG ACTCTGCCTT 
GTTTATTTTT CTTCTTTTCT GGTTAAGCTC TTGTACTCTT AATGTGACGC 
TTCTTGATTA TTACTCTCGC GTTTTATTCT ATGGCATCTT TATCCAAAAA 
AAAAA

Gene models with high sequence identity

AT2G16280.1 [+] show detail - 3-ketoacyl-CoA synthase 9
E-value: 0; Score: 99.95

InterPro Scan Digest

Program	Description	E-value
superfamily	Thiolase-like	2.3e-95
HMMPfam	FAE1/Type III polyketide synthase-like protein	1.7e-146
HMMPfam	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	3.4e-12
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPIR	Very-long-chain 3-ketoacyl-CoA synthase	0
Gene3D	Thiolase-like, subgroup	6.9e-55
Gene3D	Thiolase-like, subgroup	2.1e-24

See the detailed result >

AT2G16280.1

Model type: Protein coding
Short Description: 3-ketoacyl-CoA synthase 9
Curator Summary: Encodes KCS9, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational Description: 3-ketoacyl-CoA synthase 9 (KCS9); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: response to cold, response to light stimulus, very long-chain fatty acid metabolic process, response to osmotic stress, cuticle development; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 4 (TAIR:AT1G19440.1); Has 4705 Blast hits to 4688 proteins in 1155 species: Archae - 0; Bacteria - 1679; Metazoa - 0; Fungi - 8; Plants - 2880; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL05-10-A17 introduced

F23647 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found