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  3. RAFL05-10-C05

RAFL05-10-C05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00906)

full reading [+] show sequence

Nucleotide sequence: RAFL05-10-C05 - full reading 
AGGAGAAGAA CATGGTCTCC AACTCCGAAG GACAAAACCG AGAGACGCGG 
CGAGAAAGAC GGTGACTTGA CGTGGTCTAT GGGTGGTGGT GGGAATCTCG 
TCGACGGTGT TCGTCGATGG CTTTTTCAGC GACCTTCTTC TTCTTCTTCT 
TCTTCTTCTT CCAACAATAA TAATAATAAT CACGAACAAC CCATTTTCAA 
TTCTTCTTCT TTCTCTTCTT CCTCTAACCC CAATCATTCC GCTAACTCTG 
GAGAGCTTAT TATTGAAGAA GATCTCGATT TCTCTGGTCT AACGCTTATT 
AACGTTCCTA AACGTAATCA TTTACCTATG GATCCTCACA AGAAGGGTGA 
AACTGAATTC TTCACGGAGT ATGGAGAAGC TAACAGGTAT CAGATTCAAG 
AGGTTGTTGG CAAAGGAAGT TATGGTGTTG TGGCTTCTGC TGTTGACTCA 
CACACTGGAG AGAGAGTTGC GATCAAGAAG ATCAACGATG TGTTTGAGCA 
TGTCTCCGAT GCTACTAGGA TTCTCAGAGA GATCAAATTG CTTCGGTTGC 
TTCGTCATCC TGATGTTGTG GAGATTAAAC ACATCATGTT ACCTCCTTCT 
CGCAGAGAAT TCCGCGATAT TTATGTTGTC TTTGAGTTGA TGGAATCTGA 
TCTTCATCAA GTGATCAAGG CGAATGATGA TTTGACTCCT GAGCATTATC 
AGTTTTTCTT GTACCAGCTT CTTCGTGGTC TGAAATATGT TCACGCAGCT 
AATGTGTTTC ATCGGGATTT GAAACCGAAG AACATTCTAG CTAATGCTGA 
TTGCAAATTG AAGATCTGTG ATTTTGGGCT GGCTCGCGTT TCTTTTAACG 
ATGCCCCAAC CGCTATATTT TGGACTGATT ATGTAGCTAC TCGGTGGTAT 
CGTGCCCCTG AACTCTGTGG ATCGTTTTTC TCCAAATATA CCCCTGCGAT 
TGATATCTGG AGTGTCGGTT GCATTTTTGC GGAAATGCTT TTGGGTAAGC 
CTTTGTTTCC CGGGAAAAAC GTTGTGCACC AATTGGATCT AATGACTGAC 
TTTCTTGGTA CTCCACCTCC TGAGTCAATA TCAAGGATTA GAAATGAAAA 
GGCGAGGAGA TATCTTAGCA GCATGAGGAA AAAACAACCA GTCCCTTTCT 
CTCATAAATT CCCTAAAGCT GATCCTTTGG CTCTCCGCCT TCTGGAACGC 
CTGCTTGCCT TTGATCCGAA AGATCGTGCA TCAGCTGAAG ATGCACTAGC 
TGATCCATAT TTCAGTGGTT TGTCAAATTC AGAGCGTGAA CCAACAACAC 
AGCCAATTTC AAAGCTTGAA TTTGACTTTG AGAGAAAGAA GTTAGTTAAA 
GATGATGTCA GAGAATTAAT TTACCGAGAG ATATTGGAAT ATCATCCTCA 
GATGTTGGAG GAATACCTTC GTGGTGGTGA TCAGCTTAGC TTTATGTACC 
CAAGTGGGGT AGACCGATTT AAAAGGCAAT TTGCTCATCT TGAAGAAAAT 
CAAGGTAAAC CAGGAGCAGC AGGAGGAGGA AGAAGTACTG CACTTCACAG 
ACATCATGCT TCCTTGCCAA GAGAGAGAGT TCCTGCTCCA AATGGTGAAA 
CTGCAGAAGA AAGCAGTGAT GTTGAGAGAA GAGCAGCAGC TGCTGTGGCT 
TCAACCTTGG AATCCGAGGA AGCAGACAAT GGAGGAGGTT ACAGTGCTCG 
TAACCTCATG AAGAGTGCAA GCATCAGCGG TTCTAAATGC ATTGGTGTCC 
AATCTAAAAC TGACAAAGAG GATACCATAG CTGAGGAAGA AGATAATGAA 
ACAGTTGCAG AGCTTACTGA TAAAGTTGCT TCTCTTCACA ATTCTTAAAA 
ATGATTTAGT TATTTTTTTT CTTTTCTTTT CTTTTTTCAC GAAAGTTTTC 
TGGTGAAAAG AAATTGGTTT CTCCATTCAT CCACATCTAT CTTCGTGGTT 
GGGTTTGATT TGTTGTATTT AATAGTTTTG GGGGTTTGAT GAAACTTTAA 
ATAAAAACAT CGATCTCCAT GTAATTTTTT TGTTTCTCTC TTTTCTTTAA 
ACACTCATAT TTTGAAATTA TTTATATACT ATTCAGTATT CACTTTGCTA 
CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT1G18150.1 [+] show detail - Protein kinase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Protein kinase, ATP binding site 0
PatternScan MAP kinase, conserved site 0
ProfileScan Protein kinase, catalytic domain 44.824
HMMPfam Serine/threonine-protein kinase-like domain 7.2e-66
superfamily Protein kinase-like domain 8.7e-85
Gene3D no description 8e-06
Gene3D no description 5.1e-64
HMMSmart Serine/threonine-protein kinase domain 2.4e-92
HMMSmart Tyrosine-protein kinase, catalytic domain 1.4e-13
HMMPanther MITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-REL 1.1e-227
HMMPanther CDC2, MAP KINASE-RELATED 1.1e-227

See the detailed result >

AT1G18150.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Curator Summary
ATMPK8,
Computational Description
ATMPK8; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAP kinase 15 (TAIR:AT1G73670.1); Has 120729 Blast hits to 119418 proteins in 3824 species: Archae - 100; Bacteria - 13765; Metazoa - 44723; Fungi - 12383; Plants - 29341; Viruses - 570; Other Eukaryotes - 19847 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-10-C05 introduced

  • F26404 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

4 mutant lines found