1. Home
  2. Full-length cDNAs
  3. RAFL05-10-D11

RAFL05-10-D11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00985)

full reading [+] show sequence

Nucleotide sequence: RAFL05-10-D11 - full reading 
AGGAAGCCCT AAATTTGGAT TCTCTATTCT AAAGTTTTCT CATTTCGCTA 
ATTTTGGAGA AAAACGATTG TTTTTTTTAA TCGTTTCTTC ATTTCTGATT 
CATTTTTCTT GGTTTATGAT CTGTTCAAGT AAAGGAACAA TCTTAATCGC 
TAGAGGTAAA AATTCAAATA CAATCCCTAG ATTACCCCTA AAAGGGTCAT 
CCACAAATTA CGCGAATCGA ATTCAAATTC GAAACCCAAT CAGTGTCAAA 
ACTTTCCGGC GATCATCTTC ATCGTCAATG GCGGTGGAAA CAATGTCGAT 
GGGATCAGAT TCATCAACTT TGATTCTAAC ATCAGGAGCA AGCGGTCGCG 
TTAGGGTACT CTTCTCGATG CGAGAGCTTA AGCGTCTCGT TACGATTATC 
CAATCGTTGA TTCTTTTCCT CCTCCTTCCG TTTCGCGTCG TCGTTTGGCG 
GCGGAGGACT GGTGCGGTGG TTATCAGAGA CGATAAGCAA GAGAGGAAGG 
TTTGGTCTCC TCCGCAGATC GTGGTGAGGA AGAGGAACAT CGGTGGCGAA 
AGCAGCGTTT CTCCTCCGTC GGTTCCAGCT GCGGTGGTGG ATGGGGAGGT 
TGCTGTTCGA CGTGAACTGG CGATTAAGCG AGTTTTGGAG GATGAAGGCG 
GCGATGGAAG CTCCGTCAGA GATTATTCGC TATTCACGAC GAAGAGAGGA 
GATACGTTGT TTAGTCAGTC ATGGTCACCT CTTTCCCCAA ATCACAGGGG 
ACTTATTGTT CTGCTACATG GATTAAACGA GCATAGTGGC AGGTATAGTG 
ATTTTGCAAA GCAGCTTAAT GCTAATGGGT TCAAGGTCTA TGGAATTGAC 
TGGATCGGTC ATGGCGGAAG TGATGGACTT CATGCTTACG TTCCTTCCCT 
TGATTACGCT GTCACAGATT TGAAATCATT TCTTGAAAAG GTATTCACAG 
AGAATCCAGG ACTCCCCTGT TTCTGCTTTG GACACTCAAC AGGTGGAGCA 
ATCATCCTCA AGGCTATGCT GGATCCAAAG ATTGAATCTC GAGTTTCAGG 
CATTGCATTG ACTTCACCAG CTGTTGGAGT CCAACCATCC CATCCAATCT 
TCGCTGTTCT TGCTCCAATC ATGGCGTTTC TACTACCCAG GTACCAAATC 
AGTGCAGCAA ACAAGAAAGG AATGCCGGTT TCTCGTGACC CAGCAGCTCT 
CATCGCCAAA TACTCTGACC CATTAGTCTT CACCGGATCC ATCCGGGTTA 
AAACCGGCTA CGAGATCCTT AGAATCACTG CTCACTTGCA ACAGAACCTG 
AACAAAGTGA AAGTTCCCTT TCTTGTGATG CACGGTACTG ACGACACAGT 
TACCGATCCT AGCGCCTCAA AGAAGCTCTA CGAGGAAGCT GCCTCGTCAG 
ACAAATCACT CAAGCTCTAC GACGGGTTGT TGCACGATCT TCTTTTTGAA 
CCCGAACGAG AAATCATCGC TGGAGCCATA TTAGATTGGC TAAACCAGCG 
GGTTTAGCTC GTTCAAACCA ACAATCACTA TCGCATCGAA TCAAGAGATT 
CTTGATTCAG ACAAGAATAA TTAATTCGCG GAATTTTCTG AGTGTGTTGA 
CTGAGAAACG TGAGGAAAAA GAAGTTCTTG GTCGAATTTT CTCAACTCAG 
AAGTAGAAGG AAGATAAGAG AAAAAGAGAG ACTCCAAATC TGGACTCTCT 
TGCTATGCTT CTTGACGTCG GTATATTGTT ATAAATCAAT AATTTTGTAA 
CCTTGGATTT TAATATCTTA TACCTGTAAT ACCAATTATT ATTTATATCG 
AAACTATATA TGATTTTGGC GAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT1G73480.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Hydrolase_4 9.3e-27
Gene3D no description 5.8e-30
Coil coiled-coil 0
superfamily alpha/beta-Hydrolases 4.7e-49
HMMPanther LYSOPHOSPHOLIPASE 1.5e-144
HMMPanther PHOSPHOLIPASE-RELATED 1.5e-144

See the detailed result >

AT1G73480.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G18360.1); Has 6390 Blast hits to 6380 proteins in 1730 species: Archae - 36; Bacteria - 4672; Metazoa - 140; Fungi - 153; Plants - 452; Viruses - 63; Other Eukaryotes - 874 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-10-D11 introduced

  • F12639 - Specific phenotypes were NOT observed.
  • F19725 - cauline leaf::epinastic / cauline leaf::abnormal / stem::abnormal
  • F25842 - Specific phenotypes were NOT observed.
  • F29351 - rosette leaf::abnormal / cauline leaf::abnormal / stem::present in fewer numbers in organism / stem::abnormal
  • F30023 - Specific phenotypes were NOT observed.
  • F30201 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found