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  3. RAFL05-10-D20

RAFL05-10-D20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17042)

full reading [+] show sequence

Nucleotide sequence: RAFL05-10-D20 - full reading 
CCCCGATCTG AAAATCCAAT CGACGTCGTA TTCCAAGAAA ATAGAAAAGT 
AGGATCATGG TGGCGATGAT CATGGCTTCA AGGTTTAACC GGGAAGCTAA 
GCTCGCATCT CAAATCTTGT CTACACTTTT GGGAAACCGA AGCTGCTACA 
CATCCATGGC CGCCACATCT TCCTCTGCTT TACTTCTTAA TCCGTTGACT 
TCTTCTTCTT CTTCTTCTAC TCTCCGTCGT TTCAGATGCT CGCCAGAGAT 
CTCTTCTCTC TCCTTCTCCT CCGCTTCTGA TTTCTCTCTA GCGATGAAGA 
GGCAGAGTCG GAGTTTTGCT GATGGTTCGG AACGAGATCC GTCTGTTGTG 
TGTGAGGCTG TTAAGCGCGA GACTGGACCT GATGGACTCA ACATCGCTGA 
CAATGTGTCT CAGCTCATTG GGAAAACTCC TATGGTGTAC TTGAACAGTA 
TAGCAAAAGG TTGTGTAGCA AATATTGCTG CCAAACTCGA GATCATGGAG 
CCATGTTGCA GTGTCAAGGA TAGGATTGGG TACAGTATGG TTACTGATGC 
TGAGCAAAAA GGATTTATAT CACCTGGAAA GAGTGTTCTT GTGGAACCTA 
CAAGTGGAAA CACGGGTATT GGCCTAGCAT TCATCGCTGC TTCAAGGGGC 
TATAGACTTA TCTTGACAAT GCCAGCATCC ATGAGTATGG AAAGAAGGGT 
TCTTTTAAAG GCATTTGGAG CTGAGCTTGT ATTAACAGAT CCTGCTAAAG 
GCATGACTGG AGCGGTTCAG AAGGCTGAAG AGATCTTGAA AAACACTCCT 
GATGCATACA TGCTCCAACA GTTTGACAAC CCTGCAAATC CAAAGATTCA 
TTACGAGACT ACTGGTCCTG AGATCTGGGA TGATACAAAG GGCAAGGTGG 
ATATCTTTGT TGCAGGAATT GGAACTGGTG GAACTATCAC TGGTGTTGGT 
CGATTTATTA AAGAGAAAAA TCCCAAAACG CAGGTTATTG GTGTAGAACC 
CACCGAAAGC GATATACTTT CTGGTGGCAA ACCGGGACCT CACAAGATTC 
AAGGAATTGG AGCTGGATTT ATACCTAAGA ATTTGGATCA GAAAATTATG 
GATGAAGTCA TAGCGATTTC AAGTGAGGAA GCTATAGAAA CCGCAAAGCA 
ACTAGCTCTT AAGGAAGGCT TGATGGTTGG TATATCATCT GGAGCTGCAG 
CTGCTGCTGC AATCAAGGTG GCTAAGAGAC CTGAGAATGC TGGAAAACTC 
ATAGCTGTTG TTTTCCCGAG CTTCGGGGAG AGATATCTAT CGACCCCGCT 
GTTCCAGTCT ATCCGGGAAG AGGTGGAGAA AATGCAGCCT GAGGTATGAA 
CATTAGCAAC TTGGTCTACT TCTGCAAAGC TCTTTCTCCC ATAATTACAG 
TCTGAGTGCT AAGCAATTTA TTTTTATCAA TAAGGCATTA GTGAATGTGG 
TTTGAGTTCT ATTTTGGATA TCCAACACTA GTCTATGTTT TACTCAACAT 
TTTCTGTTGG AAATCCCAAT GCTTAATTAT ATTGATAAAA AAAA

Gene models with high sequence identity

  1. AT3G59760.3 [+] show detail - O-acetylserine (thiol) lyase isoform C
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Cysteine synthase K/M 7.2e-208
HMMTigr Cysteine synthase A 1.4e-215
superfamily Pyridoxal phosphate-dependent enzyme, beta subunit 5e-93
Gene3D no description 1.8e-69
PatternScan Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site 0
HMMPanther CYSTEINE SYNTHASE 2.6e-150
HMMPanther SER/THR DEHYDRATASE, TRP SYNTHASE 2.6e-150
HMMPfam Pyridoxal phosphate-dependent enzyme, beta subunit 1.6e-59
Coil coiled-coil 0

See the detailed result >

AT3G59760.3

Model type
Protein coding
Short Description
O-acetylserine (thiol) lyase isoform C
Curator Summary
Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC
Computational Description
O-acetylserine (thiol) lyase isoform C (OASC); FUNCTIONS IN: protein binding, cysteine synthase activity, zinc ion binding, ATP binding; INVOLVED IN: cysteine biosynthetic process, pollen tube development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: O-acetylserine (thiol) lyase B (TAIR:AT2G43750.2); Has 22643 Blast hits to 22626 proteins in 2678 species: Archae - 432; Bacteria - 15847; Metazoa - 414; Fungi - 670; Plants - 570; Viruses - 2; Other Eukaryotes - 4708 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-10-D20 introduced

  • F17523 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found