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RAFL05-10-E01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01023)

full reading [+] show sequence

Nucleotide sequence: RAFL05-10-E01 - full reading 
ATCGCGCGCT TTGTCGCTTG AGCATCCCCT GCGCAAATTA TCCTCCTCCG 
CCGTCGCATA ACCGGCGCAC ATTAGTGAAA TCGGAAAAAT CCGTCTCTCC 
TCCTTCGTAA TGGCGTCGAC AGTCTCAGTT CAACCGGGTC GGATCCGGAT 
CCTAAAGAAA GGCTCATGGC AACCGTTGGA TCAAACGGTG GGTCCCGTCG 
TTTACTGGAT GTTCAGAGAT CAACGGTTGA AAGATAACTG GGCGTTAATC 
CACGCCGTTG ATCTGGCAAA CAGAACCAAC GCGCCGGTGG CCGTCGTTTT 
CAATCTGTTC GATCAATTTC TGGACGCAAA AGCGAGGCAA TTAGGGTTTA 
TGTTAAAGGG TTTGCGTCAG CTTCACCACC AAATCGATTC TCTCCAAATT 
CCGTTTTTTC TCTTACAGGG AGATGCAAAG GAGACAATCC CTAATTTCCT 
CACAGAATGT GGAGCTTCAC ATCTGGTTAC TGATTTCTCT CCTTTACGGG 
AAATCCGGCG TTGTAAAGAT GAGGTTGTCA AGAGAACGAG TGATTCATTA 
GCGATACATG AAGTTGATGC TCACAATGTA GTTCCAATGT GGGCTGCTTC 
GAGTAAATTG GAGTACAGTG CTAGAACAAT TAGGGGTAAG ATCAACAAGC 
TACTACCTGA TTACCTCATT GAGTTTCCTA AACTTGAGCC GCCGAAGAAG 
AAATGGACGG GGATGATGGA TAAGAAGCTT GTTGATTGGG ATAGCCTCAT 
TGATAAAGTT GTAAGGGAGG GTGCAGAAGT TCCTGAAATT GAATGGTGTG 
TGCCTGGAGA AGATGCAGGG ATTGAAGTAT TGATGGGGAA TAAAGATGGT 
TTTTTGACGA AGAGGTTGAA GAATTATTCA ACTGACCGGA ATAATCCTAT 
AAAGCCGAAA GCACTCTCTG GTCTCTCTCC TTATCTACAT TTCGGGCAGG 
TATCAGCTCA GCGTTGTGCC TTGGAGGCGC GTAAAGTCCG GAGTACTTCC 
CCTCAGGCGG TAGACACATT CTTGGAAGAA TTGATTGTGC GAAGAGAACT 
CTCCGACAAT TTTTGCTATT ATCAACCTCA TTATGATTCT TTGAAGGGAG 
CTTGGGAGTG GGCACGCAAG TCACTAATGG ATCATGCTTC AGATAAGAGG 
GAACACATTT ACTCGTTGGA GCAGTTAGAG AAGGGACTGA CAGCAGATCC 
TTTAGAGATG GTTTATCAAG GGAAAATGCA CGGTTTCATG CGAATGTATT 
GGGCAAAGAA GATTCTAGAA TGGACCAAGG GACCTGAAGA GGCTCTTTCA 
ATATCCATCT ATCTAAATAA CAAGTATGAG ATTGATGGTC GTGACCCGAG 
TGGATATGTT GGGTGCATGT GGTCTATATG TGGCGTTCAT GATCAGGGAT 
GGAAAGAGAG GCCGGTTTTT GGGAAGATAC GGTACATGAA CTACGCGGGT 
TGCAAACGGA AATTCAATGT GGATAGTTAC ATCTCTTATG TCAAGAGTTT 
GGTGTCAGTA ACAAAGAAGA AGAGGAAAGC TGAAGAACAG CTCACCAGAG 
ACTCTGTTGA TCCCAAGATA ACTATTGTTT AGGTTAACTT TGAATGCCTT 
GGTATTGTTA CTTGTTAGAC TACTTTGCCC TGTGTTGGGC ATTTTTATAT 
TCAACGTATT CAGATCCAAA AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT1G12370.1 [+] show detail - photolyase 1
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMPfam DNA photolyase, N-terminal 1.1e-31
HMMPfam DNA photolyase, FAD-binding/Cryptochrome, C-terminal 2e-28
HMMTigr DNA photolyase, class 2 0
superfamily DNA photolyase, FAD-binding/Cryptochrome, C-terminal 7.4e-58
superfamily DNA photolyase, N-terminal 2.1e-50
Gene3D Rossmann-like alpha/beta/alpha sandwich fold 3.3e-21
Gene3D no description 2.6e-06
PatternScan DNA photolyase, class 2 0
PatternScan DNA photolyase, class 2 0
HMMPanther DNA photolyase, class 2 2.9e-144

See the detailed result >

AT1G12370.1

Model type
Protein coding
Short Description
photolyase 1
Curator Summary
encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele
Computational Description
photolyase 1 (PHR1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 1792 Blast hits to 1788 proteins in 474 species: Archae - 23; Bacteria - 644; Metazoa - 122; Fungi - 53; Plants - 107; Viruses - 39; Other Eukaryotes - 804 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-10-E01 introduced

  • F15449 - rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::epinastic

Mutant lines with disrupted or induced

2 mutant lines found