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RAFL05-10-F02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00952)

full reading [+] show sequence

Nucleotide sequence: RAFL05-10-F02 - full reading 
AAAAGCTGAG AGTCAATAGA GAGCTTTGTG CTGAGCATAG CAGAGAAGAG 
TTATGGGGAA AGGAGGGATG TCTCAAGGAG AAGGCTCAAA GGTTGAAGAA 
GAAAACATGG CTGCTTGGTT GGTTGGTATC AATACCCTCA AGATCCAACC 
TTTTCTTCTT CCTTCCGTTG GTCCTCATGA TGTGAGAGTT AGGATGAAAG 
CTGTTGGTAT TTGTGGAAGT GATGTTCATT ACCTTAAGAC CATGAGATGT 
GCGGATTTTG TGGTGAAAGA GCCGATGGTG ATTGGACATG AATGTGCTGG 
GATCATTGAA GAAGTAGGTG AAGAAGTGAA ACATTTAGTG GTTGGTGACC 
GTGTAGCTCT TGAACCTGGG ATTAGTTGTT GGAGATGCAA TCTCTGCAGG 
GAAGGACGAT ACAACCTTTG TCCAGAAATG AAGTTCTTTG CAACTCCACC 
GGTTCATGGC TCTTTAGCTA ACCAAGTGGT ACACCCTGCG GACCTATGCT 
TCAAATTGCC TGAGAATGTG AGTTTGGAGG AAGGAGCAAT GTGTGAACCA 
CTTAGTGTTG GTGTCCATGC TTGTCGCCGA GCTGAGGTTG GTCCTGAAAC 
AAACGTTTTG GTAATGGGAG CTGGACCTAT TGGCCTTGTT ACAATGTTGG 
CTGCTCGGGC TTTCAGTGTG CCTAGAATTG TTATTGTGGA TGTTGATGAG 
AACCGTTTAG CCGTAGCAAA ACAGCTCGGC GCAGATGAGA TTGTACAAGT 
GACAACAAAC TTAGAGGATG TTGGTTCTGA GGTTGAACAG ATTCAGAAAG 
CTATGGGGTC AAACATCGAT GTAACATTCG ACTGTGCGGG TTTTAACAAA 
ACCATGTCGA CAGCATTAGC AGCCACTCGT TGTGGCGGTA AAGTCTGTCT 
TGTCGGAATG GGTCACGGTA TAATGACTGT CCCTCTCACT CCTGCAGCTG 
CAAGGGAGGT AGATGTGGTG GGTGTGTTCA GGTACAAGAA CACATGGCCA 
TTGTGTCTTG AGTTCCTGAC AAGTGGTAAG ATTGATGTAA AGCCACTCAT 
AACCCACAGA TTCGGTTTCT CTCAAAAGGA AGTGGAAGAT GCCTTTGAAA 
CCAGTGCTCG TGGGAGCAAT GCCATCAAAG TTATGTTCAA TCTCTGAAAA 
CAATCTTTGC TTTTCTAAGA ACATATTAAG GTTTCATAAT AAGGAAGCTT 
CTGTAACTTT GTTATCCATT GTATATCAAC TCTGAATCTC TCTTGAATAA 
GATAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT5G51970.2 [+] show detail - GroES-like zinc-binding alcohol dehydrogenase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Polyketide synthase, enoylreductase 0.00068
Gene3D no description 8.9e-56
HMMPfam Alcohol dehydrogenase GroES-like 3.4e-33
HMMPfam Alcohol dehydrogenase, zinc-binding 1.7e-24
superfamily GroES-like 9.3e-59
superfamily NAD(P)-binding domain 5.4e-34
superfamily GroES-like 0.013
HMMPanther ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED 3.6e-100
HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 3.6e-100
PatternScan Alcohol dehydrogenase, zinc-containing, conserved site 0

See the detailed result >

AT5G51970.2

Model type
Protein coding
Short Description
GroES-like zinc-binding alcohol dehydrogenase family protein
Curator Summary
Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro.
Computational Description
GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT5G63620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-10-F02 introduced

  • F18639 - Specific phenotypes were NOT observed.
  • F19117 - Specific phenotypes were NOT observed.
  • F23649 - Specific phenotypes were NOT observed.
  • F27836 - Specific phenotypes were NOT observed.
  • F28011 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found