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RAFL05-10-H10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00949)

full reading [+] show sequence

Nucleotide sequence: RAFL05-10-H10 - full reading 
GTAAAAATTA CACAAAGGAT AGTGTCTGCA AATATCTAAA TGAAAACACT 
TAATTCCAAA ATGAGAAATC AAGTGGGTTT TGCCTAGCTA ATTGTATAAA 
TAGTAACACA ATCATAATCT CTTCTTCCAT CAGGTCTTCT TCATAATATA 
TTTCTTCTCT AATAATTGAA AGCAAAAGAA AACAGTTTTT TTTTTTAGAA 
AGGTAAAGAA ATGGAGGAAA CAAAGGAGAG AAAGATAGTA GTAGCAGTAG 
ACGAAAGCGA AGAGAGCATG GAAGCTCTGT CATGGAGTCT TGACAATCTT 
TTTCCATATG GTTCCAATAA TACACTCATC CTCCTCTACG TCAAGCCCCC 
TCTTCCCGTT TACTCTTCCC TCGATGCCGC AGGGTTTATA GTGACAGGAG 
ACCCGGTTGC AGCTTTGAAG AAGTATGAAT ACGAGCTCGT GGAATCGGTC 
ATGGCTCGGT CTCGAACCGT GTACCAAGAT TATGAGTCTG ATATTAATAT 
AGAGAGACGA GTTGGAAGAG GAGATGCTAA GGAAGTTATA TGCAACGCAG 
TTCAGAAACT TAGAGTTGAT ATGTTAGTAA TGGGCACTCA TGACTATGGC 
TTCTTCAAAA GGGCTTTGCT AGGGAGTGTG AGCGAGTATT GCGCCAAACG 
AGTCAAGTGT CCTGTGGTTA TCGTCAAGAA GCAAGCTCAA GATAATTAAG 
CTCATATGAT TGCATTGTGT ATATGTTTCG AAAGAACTGG TGTAACACTT 
GAATCAATCT TCGTATGCGA TAATAAAATA CATAACGGTT TAAACGAAAA 
AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT3G62550.1 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Universal stress protein A 1.3e-15
FPrintScan Universal stress protein A 1.3e-15
FPrintScan Universal stress protein A 1.3e-15
HMMPfam UspA 1.8e-30
superfamily Adenine nucleotide alpha hydrolases-like 1.3e-28
Gene3D Rossmann-like alpha/beta/alpha sandwich fold 3.4e-27

See the detailed result >

AT3G62550.1

Model type
Protein coding
Short Description
Adenine nucleotide alpha hydrolases-like superfamily protein
Computational Description
Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT1G09740.1); Has 3064 Blast hits to 3005 proteins in 732 species: Archae - 271; Bacteria - 1876; Metazoa - 108; Fungi - 22; Plants - 723; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-10-H10 introduced

  • F02341 - Specific phenotypes were NOT observed.
  • F07540 - seed::increased size
  • F11015 - seed::increased size / seed::increased length
  • F13645 - Specific phenotypes were NOT observed.
  • F17718 - Specific phenotypes were NOT observed.
  • F22312 - Specific phenotypes were NOT observed.
  • F22625 - Specific phenotypes were NOT observed.
  • F22642 - Specific phenotypes were NOT observed.
  • F22926 - Specific phenotypes were NOT observed.
  • F28124 - seed::increased size

Mutant lines with disrupted or induced

13 mutant lines found