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  3. RAFL05-10-L11

RAFL05-10-L11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17047)

full reading [+] show sequence

Nucleotide sequence: RAFL05-10-L11 - full reading 
CCCTGGACGG AATCTATAAG ATAATTTTCT CCCTAGGGAT TAGGGCTCAC 
AATCTCAAAT CTCTGATTCT TCGATACGAT AAATTCTTCC TCGATATAGA 
AACCACTGAT TAGATCCTAA TTCGTCGCCT AGCTCAAAAG ATGGTGCTTT 
CGCAAAAGCT TCATGAAGCA TTTAAAGGAA CAGTTGAGAG GATCACAGGT 
CCTCGTACGA TCTCGGCGTT CAAGGAGAAG GGAGTTCTCA GCGTCAGCGA 
GTTCGTACTT GCCGGAGATA ATCTCGTCTC CAAGTGTCCC ACCTGGTCTT 
GGGAATCTGG TGACGCAAGC AAAAGGAAGC CATACTTGCC CTCGGACAAA 
CAGTTTTTGA TTACTAGAAA TGTACCTTGT CTACGGAGAG CTGCTTCTGT 
GGCAGAGGAT TATGAAGCTG CTGGAGGTGA AGTGTTGGTT GATGATGAAG 
ATAATGATGG TTGGCTGGCT ACACATGGGA AACCGAAAGA TAAAGGCAAG 
GAAGAGGATA ACTTACCATC CATGGATGCC TTGGATATAA ACGAGAAAAA 
TACTATCCAA TCAATACCTA CGTATTTTGG AGGTGAGGAG GATGATGATA 
TTCCAGACAT GGAGGAGTTC GATGAGGCTG ACAATGTGGT AGAAAATGAT 
CCGGCAACTC TTCAGTCAAC TTATCTTGTG GCTCATGAAC CTGATGACGA 
TAACATTCTC CGAACTCGGA CATATGATCT CAGCATAACG TATGATGAGT 
ATTACCAAAC TCCTCGTGTT TGGCTGACCG GTTATGATGA GTCAAGGATG 
CTGCTGCAAC CTGAACTTGT AATGGAGGAT GTTAGCCAAG ACCATGCTCG 
TAAAACGGTC ACAATCGAAG ATCATCCACA CTTGCCTGGT AAACATGCTT 
CAGTTCATCC ATGTCGGCAT GGAGCTGTTA TGAAGAAAAT CATTGATGTA 
TTAATGTCGC GTGGAGTAGA ACCTGAAGTC GACAAGTACC TCTTCCTGTT 
CTTGAAGTTC ATGGCATCAG TTATTCCAAC AATTGAGTAC GATTACACAA 
TGGACTTTGA TCTCGGTAGC TCAAGCACCT AATATCAGAT TTAAACAAGT 
ATGTGCTCGT GAATCCGGGA AACAAGTATG GTCTCATGGA TGGCTGGATG 
GCTCTGCACT GTACATAAAA CAGAGTCCTC ACTTTCATTT CTCTCCAAGA 
TAAACTTTAA GGTGTTGTGG TTTAATCACT CGTTTATCTA AAGTTTACGC 
TGATGAATAG TAATTTGTGA CAAAACTCTG AAAACGGGTA TTTGATCAAA 
ACTGATTCGG TGTGGTTCAA GAAAAAAA

Gene models with high sequence identity

  1. AT5G61500.1 [+] show detail - autophagy 3 (APG3)
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
HMMPanther AUTOPHAGOCYTOSIS PROTEIN AUT1-RELATED 1.4e-157
ProfileScan Egg jelly receptor, REJ-like 8.635
HMMPfam Autophagy-related protein 3, N-terminal 4.5e-44
HMMPfam Autophagy-related protein 3 5.5e-24
HMMPfam Autophagy-related protein 3, C-terminal 9.1e-16

See the detailed result >

AT5G61500.1

Model type
Protein coding
Short Description
autophagy 3 (APG3)
Computational Description
ATG3; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 3 (InterPro:IPR007135), Autophagy-related protein 3, C-terminal (InterPro:IPR019461), Autophagy-related protein 3, N-terminal (InterPro:IPR007134); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-10-L11 introduced

  • F19439 - stem::increased thickness / stem::abnormal

Mutant lines with disrupted or induced

4 mutant lines found