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  3. RAFL05-10-M11

RAFL05-10-M11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02493)

full reading [+] show sequence

Nucleotide sequence: RAFL05-10-M11 - full reading 
GAAATCGAGT CTCCTCTTAT TCGACGACCT GCCCCAACTA TAAACATGAC 
TTTTACACAC TTGACATAAC TTCGTTTGTA TCGCTTTTTT GAAATTCTAT 
ATATTATTAT TGTTTGAGCA GAAACTAAGA CAAAATTAAG ACTTTTCTCT 
CTTCTTCTTC TCCACTGGGT CGATCTTTAC GAGGTTCACT TGTACGGATT 
CACTTTAACA ACAGATTCGC CATGGCCGCC GCCGTCGCAG CACCGAGACT 
CATCTCCTTG AAAGCCGTCG CGAAGCTAGG TTTCCGTGAG ATCTCTCAAA 
TCCGACAATT GGCTCCGCTT CACTCTGCGA TACCTCATTT CGGAATGCTG 
CGATGTAGAT CGCGGCAGCC GTTTTCTACC TCTGTTGTGA AAGCTCAAGC 
TACTGCTACT GAGCAATCAC CAGGGGAAGT TGTTCAAAAA GTGGAATCTC 
CAGTGGTCGT TATCACTGGT GCCTCGAGAG GGATTGGTAA AGCAATTGCT 
CTAGCCTTGG GTAAAGCTGG CTGCAAGGTC TTGGTGAATT ATGCTAGGTC 
AGCAAAAGAG GCTGAAGAAG TTGCTAAACA GATTGAAGAA TATGGTGGCC 
AGGCTATCAC TTTTGGGGGT GATGTCTCGA AAGCGACTGA TGTGGATGCG 
ATGATGAAAA CCGCTCTTGA CAAATGGGGA ACCATTGATG TTGTGGTTAA 
CAATGCAGGA ATTACTCGGG ATACCTTGTT AATACGAATG AAGCAATCAC 
AATGGGACGA AGTGATTGCT TTGAATCTCA CTGGTGTATT TCTCTGTACT 
CAGGCAGCAG TAAAGATCAT GATGAAGAAA AAAAGGGGAA GAATCATCAA 
TATCTCGTCA GTTGTTGGTC TCATTGGTAA TATTGGTCAA GCAAACTACG 
CAGCGGCTAA AGGTGGAGTT ATTTCGTTTT CCAAGACTGC TGCCAGAGAA 
GGTGCGAGCA GGAATATAAA TGTCAATGTG GTTTGCCCCG GATTCATTGC 
ATCTGACATG ACTGCAGAGC TTGGAGAAGA CATGGAAAAG AAAATCCTGG 
GAACAATCCC ATTAGGACGG TATGGAAAAG CTGAAGAAGT GGCTGGCTTG 
GTAGAATTCT TGGCTCTCAG TCCTGCAGCC AGTTACATAA CCGGACAGGC 
ATTCACCATT GATGGAGGTA TTGCTATCTA GACATTTGGT ATGAGTCGGC 
TTTTGTTTAG TTAAAACAAT TTGGTAAAAG AGACAAAGTT GAGTTCTTTT 
TAGCACTTGG TCGGATTGCT ATTTTGCGGT TTCTGTTAAG AAATATGTAA 
CACTTACTGC TTAAACTACG TATTTGGTCA CTTTCAGAAA CTAGAAATCG 
ATTAATC

Gene models with high sequence identity

  1. AT1G24360.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr 3-oxoacyl-(acyl-carrier-protein) reductase 4.9e-157
FPrintScan Glucose/ribitol dehydrogenase 2.8e-45
FPrintScan Glucose/ribitol dehydrogenase 2.8e-45
FPrintScan Glucose/ribitol dehydrogenase 2.8e-45
FPrintScan Glucose/ribitol dehydrogenase 2.8e-45
FPrintScan Glucose/ribitol dehydrogenase 2.8e-45
FPrintScan Glucose/ribitol dehydrogenase 2.8e-45
FPrintScan Short-chain dehydrogenase/reductase SDR 0.000000000000058
FPrintScan Short-chain dehydrogenase/reductase SDR 0.000000000000058
FPrintScan Short-chain dehydrogenase/reductase SDR 0.000000000000058
HMMSmart Polyketide synthase/Fatty acid synthase, KR 0.000014
superfamily NAD(P)-binding domain 1e-83
HMMPfam Short-chain dehydrogenase/reductase SDR 5.3e-43
PatternScan Short-chain dehydrogenase/reductase, conserved site 0
Gene3D NAD(P)-binding domain 1.8e-79
HMMPanther 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 2.8e-154
HMMPanther Short-chain dehydrogenase/reductase SDR 2.8e-154

See the detailed result >

AT1G24360.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: 3-oxoacyl-[acyl-carrier-protein] reductase activity, copper ion binding; INVOLVED IN: oxidation reduction, metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxoacyl-(acyl-carrier-protein) reductase (InterPro:IPR011284), Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29370.1); Has 133396 Blast hits to 132816 proteins in 3924 species: Archae - 1008; Bacteria - 83642; Metazoa - 7884; Fungi - 7548; Plants - 3127; Viruses - 5; Other Eukaryotes - 30182 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-10-M11 introduced

  • F13731 - Specific phenotypes were NOT observed.
  • F16021 - Specific phenotypes were NOT observed.
  • F18448 - Specific phenotypes were NOT observed.
  • F27933 - whole plant::decreased height / stem::abnormal / stem internode::decreased length

Mutant lines with disrupted or induced

9 mutant lines found