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  3. RAFL05-10-N19

RAFL05-10-N19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02495)

full reading [+] show sequence

Nucleotide sequence: RAFL05-10-N19 - full reading 
GACGCGATTG GGTAAGCGAT GCACATCGTC TTCTCTGTCG ATGATTTGAC 
CGAATCCTTC TGGCCTGTTC CCGCTCCGGC GCCGTCGCCG GGATCGTCAT 
CGACTCCGTC ACCGACGCAG AACGTGGCGG ATGGGATGAC TCGAAGTCAA 
TCGGAGTGGG CGTTCCACAG GCTTATCAAT GAGTTGTCTG GTTCCGATTC 
GAGCCCTACG ACTAACACAA TCGAGAGATC ACCTCCACCG GTTCAGTCTC 
TTTCGAGATT AGAAGAAACC GTTGACGAAA CCGAAGATGT TGTTGAGATT 
CAGAAACCGC AGAATCATCG ACGGCTCCCT GTTGATGATC AAGGGAAGAA 
TCGGAATCGT GCTCCGTCGT CTGATCCGGT TGATTCTTCA GCTCCTGTTG 
TTGTTGATCC TAATCAGTAT CATGCGATTC TTAAGAGCAA GCTCGAGCTT 
GCTTGCGCTG CTGTTGCTCG TCGTGTGGGA ACTGTGAAAC CGGAAGATTC 
GAGTGCTTCA GCTAGCAATC AAAAACAAGC TCAAGGCTCC ATTGTGGCAC 
AAACCTCACC TGGTGCTTCA TCTGTTAGAT TTTCTCCCAC AACAAGCACG 
CAAAAGAAAC CTGATGTTCC AGCCAGACAA ACTAGTATTT CATCACGAGA 
TGATTCTGAT GACGATGATC TTGATGGAGA CGCAGATAAT GGAGATCCTA 
CTGATGTGAA GCGTGCTAGG AGGATGCTCT CAAACCGAGA ATCCGCTAGG 
CGCTCTAGGA GAAGAAAGCA AGAACAAATG AATGAATTTG ATACACAGGC 
CAATTAAGAG CCGAGCATTC AACTTTAATT AATCGTCTTA GTGACATGAA 
TCATAAGTAT GATGCAGCTG CTGTTGACAA CAGAATTCTA AGAGCTGATA 
TCGAAACTTT GAGAACAAAG GTTAAGATGG CAGAGGAAAC TGTGAAAAGA 
GTGACAGGAG TGAACCCTTT GCATTGGTCA AGACCAAACA TGGGCATACC 
ATTCAGCAAC ACACCGAGTG CTTCCTCTAG TATTCCGCCA AACTCTAACC 
ACATTTTGAA ACCAGCAAAT TCAAGTACCA ACACCAGTGC TGGTTTAGCA 
CAAAATCAGA GAGTGGAGAC GGCAAATTTC TTGCCGGAAC AGGTGAACCG 
TGAAGGCATG CAGAATCCAT TTGCTCCTGA TTCTAATCTG TATGAAACCC 
TACCCCATTG GAATCACAAG CATTAACCAG AAAAAGAGTC ATTGGTTTTG 
TGATTTTGAT TGAGGTAACT ATTGTCTGTA TTTTTATTTA CTGTATGACT 
CAGCGACGGT AAACTCTTAA TATTATATAT ATGATTGGAC ATGATGGAT

Gene models with high sequence identity

  1. AT3G54620.1 [+] show detail - basic leucine zipper 25
    E-value: 0; Score: 99.70

 

InterPro Scan Digest

Program Description E-value
PatternScan Basic-leucine zipper (bZIP) transcription factor 0
Coil coiled-coil 0
Coil coiled-coil 0
ProfileScan Basic-leucine zipper (bZIP) transcription factor 8.864
HMMPfam bZIP transcription factor, bZIP-1 3.6e-08
HMMPfam Basic leucine-zipper, C-terminal 1.3e-18

See the detailed result >

AT3G54620.1

Model type
Protein coding
Short Description
basic leucine zipper 25
Curator Summary
bZIP transcription factor-like protein mRNA
Computational Description
basic leucine zipper 25 (BZIP25); FUNCTIONS IN: protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), Basic leucine-zipper, C-terminal (InterPro:IPR020983); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT4G02640.2); Has 2261 Blast hits to 2259 proteins in 207 species: Archae - 2; Bacteria - 16; Metazoa - 141; Fungi - 138; Plants - 1903; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-10-N19 introduced

  • F06446 - seed::increased size / seed::increased length
  • F28733 - cauline leaf::epinastic / whole plant::decreased height / stem::present in greater numbers in organism / stem internode::decreased length

Mutant lines with disrupted or induced

3 mutant lines found