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RAFL05-11-A20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09298)

full reading [+] show sequence

Nucleotide sequence: RAFL05-11-A20 - full reading 
ATGAGCTATT GAGCTAGTAG CCTCTTGTAC TCTTCCATTT TACGCGCAAT 
CCACGCACCA ACAAAAAGAA AAGAAAAGAA GAGATAAAGA ATATCTTTAA 
AAAGTAAGTG TGGAGAATTC TTTCTTCTCA ATAAACAACA ACATGTCGTC 
GAGCAATGAA AATGCTAAGG CACAAGCGCC GGAGAAATCT GACTTTACCC 
GGAGATGTAG TTTGCTCAGC CGTTACTTGA AGGAGAAGGG TAGTTTCGGA 
AACATTGATC TTGGCTTATA CCGAAAACCC GATTCCAGTC TCGCGTTGCC 
CGGAAAATTC GATCCACCAG GGAAACAAAA TGCGATGCAT AAGGCAGGGC 
ATTCCAAAGG CGAACCCTCT ACCTCATCAG GAGGCAAAGT CAAAGATGTT 
GCTGACCTCA GTGAATCACA GCCAGGAAGT TCGCAGCTGA CCATATTCTT 
CGGAGGGAAA GTTTTAGTAT ATAATGAGTT CCCCGTAGAC AAAGCTAAAG 
AGATTATGGA AGTAGCAAAA CAAGCCAAGC CTGTGACTGA GATTAACATT 
CAGACACCAA TCAATGACGA AAACAACAAC AACAAGAGCA GCATGGTTCT 
TCCTGATCTC AATGAGCCTA CTGATAATAA TCACCTAACA AAGGAACAAC 
AACAGCAACA AGAACAAAAT CAGATCGTGG AACGTATAGC ACGTAGAGCT 
TCCCTCCATC GATTCTTTGC TAAACGGAAA GACAGAGCTG TGGCTAGGGC 
TCCGTACCAA GTTAACCAAA ACGCAGGTCA TCATCGTTAT CCTCCCAAGC 
CAGAGATTGT AACCGGTCAA CCACTAGAGG CAGGACAGTC GTCACAAAGA 
CCGCCGGATA ACGCCATTGG TCAAACCATG GCCCATATCA AATCAGACGG 
TGATAAAGAT GATATTATGA AGATTGAAGA AGGCCAAAGT TCGAAAGATC 
TCGATCTAAG GCTATAGTAA TATTTGCTAA ATTTCTTGTA GGAACTGAGT 
TTTTAGATTA ACGTTTCGAT TTTTCTGACT TATCTAAGTG ATTTTATTTT 
GCTTTGTAC

Gene models with high sequence identity

  1. AT1G17380.1 [+] show detail - jasmonate-zim-domain protein 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Tify 15.595
HMMPfam Tify 1.3e-15
HMMPfam CCT domain-like 1.1e-12

See the detailed result >

AT1G17380.1

Model type
Protein coding
Short Description
jasmonate-zim-domain protein 5
Computational Description
jasmonate-zim-domain protein 5 (JAZ5); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 6 (TAIR:AT1G72450.1); Has 301 Blast hits to 296 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 301; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-11-A20 introduced

  • F09529 - Specific phenotypes were NOT observed.
  • F27337 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

5 mutant lines found