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RAFL05-11-B16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01291)

full reading [+] show sequence

Nucleotide sequence: RAFL05-11-B16 - full reading 
ATCGCTCGGT GAATTCGAGG ATCCTCGAGC TTTTTGATCG GAGACTTTTT 
CTCTCATCGT CGTTGTTTGA ATTCTCCGGC TGAGAGATGC TTGCTTGACG 
ACGAATCTCC ACCGATCTTT TACCTTTTCG CACAACAAGT AAGAGAAGGA 
TGTCGACTCC AGCGAGGAAG AGATTGATGA GGGATTTCAA GAGGTTGCAG 
CAAGACCCAC CTGCAGGAAT TAGTGGTGCT CCACAAGACA ACAATATCAT 
GTTGTGGAAT GCTGTTATAT TCGGGCCTGA TGATACCCCT TGGGATGGAG 
GTACTTTCAA ATTGTCACTG CAGTTTTCGG AAGATTATCC AAATAAACCA 
CCAACAGTGC GGTTTGTTTC ACGGATGTTC CATCCAAACA TTTATGCTGA 
TGGGAGTATA TGCTTGGACA TTCTCCAAAA CCAATGGAGT CCAATATACG 
ATGTCGCTGC TATACTAACC TCCATTCAGT CATTGCTATG TGATCCTAAT 
CCGAATTCTC CTGCAAATTC GGAAGCTGCA CGAATGTTCA GTGAAAGCAA 
GCGCGAGTAC AACAGAAGAG TCCGCGAGGT TGTCGAACAA AGCTGGACTG 
CCGACTAGTA ATTATATCAT TGTAGCATTT GTCTTCAAAT AACATTAAAC 
CTCCTCTCTT GTATCTGATT TCGACCATCA CATCTCTGAG AGAAGTTTAC 
TCTCCCTACC ACTCTCTTTT ATGTCTTTCT GTGTTTTTCA AACTCTGTGA 
TTTGTTGCTC TTCATGTTTT TTTTCTTTGT ATTTTCGTAA CCACATTCAT 
CTTCATAATT ATCATATGTA TTTCAGTCGT

Gene models with high sequence identity

  1. AT2G02760.1 [+] show detail - ubiquiting-conjugating enzyme 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Ubiquitin-conjugating enzyme, E2 5e-67
superfamily Ubiquitin-conjugating enzyme/RWD-like 4.4e-64
HMMPanther UBIQUITIN-CONJUGATING ENZYME RAD6 1.1e-115
HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 1.1e-115
ProfileScan Ubiquitin-conjugating enzyme, E2 47.009
PatternScan Ubiquitin-conjugating enzyme, E2 0
Gene3D Ubiquitin-conjugating enzyme/RWD-like 2.1e-56
HMMPfam Ubiquitin-conjugating enzyme, E2 4.7e-52

See the detailed result >

AT2G02760.1

Model type
Protein coding
Short Description
ubiquiting-conjugating enzyme 2
Curator Summary
ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene.
Computational Description
ubiquiting-conjugating enzyme 2 (UBC2); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin carrier protein 1 (TAIR:AT1G14400.2); Has 10642 Blast hits to 10588 proteins in 402 species: Archae - 0; Bacteria - 2; Metazoa - 4556; Fungi - 2331; Plants - 2015; Viruses - 26; Other Eukaryotes - 1712 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-11-B16 introduced

  • F04530 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found