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  3. RAFL05-11-B17

RAFL05-11-B17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12222)

full reading [+] show sequence

Nucleotide sequence: RAFL05-11-B17 - full reading 
GTGCAACAAC CTAACCATGG AAATTGCAAT TTGCAAACAT GGCGCTCGCG 
CTCTCGCTGT CGGCATGTTC TCCTCCACTC CGCCGCACTC GTCGTGCCGG 
TTTTCGAACA AGCTGCTCGA TCTTCGCGAA TCCAGCACAG CGAGCCAAGA 
GGAAGCTGCT TGAGCTGATC TCCGAGGAGG ATCGAGGTCT GAGAACCCAG 
AAAGACCCCA AGAAGCGAGA TGAAATCGTG AACGCCATCG AATCCATGAC 
GGTTATCGGG CGCAGCTCCA TCACCACAGA CGACTCTCTA TCTGCCACGT 
GGCGGCTCTT GTGGACGACG GAGAAGGAAC AGTTGTTCAT CATAGAAAAG 
GCAGGCTTGT TTGGGACGAC CGCCGGAGAC GTTTTGCAGG TGATCGATGT 
GAATAAACGG ATCCTCAATA ACGTCATCAC TTTCCCGCCG GACGGGGTTT 
TCTTCGTACG CTCCGATATC GATATCGCTT CCCCGCAGAG AGTCAATTTC 
AGATTCAATA GTGCGGTATT GAGAGGGAAG AACTGGGAGC TCCCACTGCC 
ACCATTTGGG AAGGGCTGGT TTGAGAATGT GTATATGGAC GGTGAGATCA 
GAGTGGCCAA GGACATCAGA GGAGACTACT TAATTGTTGA TCGTGCTCCT 
TATAACTGGA CTGAATCATT TGTATAATTT GTGATGCTTT TTGCTTCTTG 
TATAAGTTAT ACACCATTTC TGTCTCTCTC CTTTATCATT GGGCCTCAAA 
TAGATGATGC AGGAATATAG GGAGGAGGAG GAAGAGGAAT TTGAAGGATC 
ATTCAAAGTG TCATCCTTGA GTTTATTTAG GGTTTTTGTC TGTGTTTGTT 
ACAAACACAC CACCCACATT TTCTATGCCC TTTTTTAATG TTATTTTCAC 
AATCCATGAC TTAAAAGGCC AACACTAATC CTTTGTCTCT TATTTCATTG 
TGAACTCACA AAGATGTTGG TGTCCGCAAG GGTAGAGAAA CAAAAGCGTG 
TTGCTTATCA GGGGAAGGCG ACAGTGCTTG CTCTCGGTAA GGCCTTGCCG 
AGCAATGTTG TTTCCCAGGA GAATCTCGTG GAGGAGTATC TCCGTGAAAT 
CAAATGCGAT AACCTTTCTA TCAAAGACAA GCTGCAACAC TTGTGCAAAA 
GCACAACTGT CAAGACACGC TACACAGTCA TGTCACGGGA GACGCTGCAC 
AAATACCCTG AACTAGCAAC CGAGGGTTCC CCAACCATCA AACAGAGGCT 
TGAGATTGCA AACGATGCGG TTGTGCAGAT GGCATATGAA GCGAGCTTGG 
TTTGCATCAA GGAATGGGGA AGGGCAGTGG AAGATATCAC TCATCTTGTC 
TACGTTTCCT CCAGTGAGTT CCGTTTGCCC GGAGGTGATC TTTACCTCTC 
GGCACAGCTG GGCCTTAGCA ACGAGGTTCA GAGAGTGATG CTGTATTTTC 
TTGGATGCTA TGGAGGTTTG AGTGGGCTGC GCGTGGCCAA AGACATTGCT 
GAGAACAACC CAGGGAGCCG TGTGTTGCTC ACCACCTCTG AGACTACCGT 
TCTGGGGTTC CGCCCACCCA ACAAAGCTCG TCCTTACAAC TTAGTCGGGG 
CTGCACTCTT TGGAGATGGA GCAGCTGCCC TGATCATCGG AGCAGACCCT 
ACAGAGTCGG AATCTCCTTT CATGGAGCTT CACTGTGCTA TGCAGCAGTT 
CCTGCCCCAA ACACAGGGGG TGATCGACGG GCGGCTGTCA GAAGAGGGCA 
TAACCTTCAA GCTAGGAAGA GACCTCCCTC AGAAGATCGA AGACAACGTG 
GAGGAGTTCT GCAAGAAGCT AGTGGCAAAG GCTGGCTCTG GTGCGTTGGA 
GTTGAATGAC CTTTTCTGGG CAGTTCATCC TGGTGGACCA GCCATCCTGA 
GCGGGCTGGA GACAAAGCTG AAGCTGAAGC CGGAAAAGCT GGAATGCAGC 
AGAAGGGCGT TGATGGATTA TGGGAACGTA AGCAGCAACA CCATCTTCTA 
CATAATGGAC AAAGTCAGGG ATGAGCTTGA GAAGAAAGGC ACAGAGGGAG 
AAGAGTGGGG TCTGGGCTTA GCTTTCGGAC CGGGAATCAC TTTCGAAGGC 
TTTCTCATGA GGAACCTCTA AATGTATATG AACTGGACAT TTCTCAACAA 
ATAAAATATA CAGGAACCGA TGCTAACACA CATACATCAT GTAATGGTTG 
CATTAGTTTT GTTCTTTAAT GGTAAATCAC AGAAATACAT CAATACAGTA 
AGTTTATAT

Gene models with high sequence identity

  1. AT4G00040.1 [+] show detail - Chalcone and stilbene synthase family protein
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
superfamily Thiolase-like 1.8e-81
HMMPIR Polyketide synthase, type III 4.6e-131
HMMPfam Chalcone/stilbene synthase, N-terminal 5.9e-101
HMMPfam Chalcone/stilbene synthase, C-terminal 2e-58
HMMPfam PAP_fibrillin 8.8e-43
Gene3D Thiolase-like, subgroup 4.2e-65
Gene3D Thiolase-like, subgroup 1.8e-41

See the detailed result >

AT4G00040.1

Model type
Protein coding
Short Description
Chalcone and stilbene synthase family protein
Computational Description
Chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 5683 Blast hits to 5679 proteins in 1391 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 67; Plants - 3528; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-11-B17 introduced

  • F01033 - Specific phenotypes were NOT observed.
  • F03705 - Specific phenotypes were NOT observed.
  • F03941 - Specific phenotypes were NOT observed.
  • F09138 - Specific phenotypes were NOT observed.
  • F11933 - Specific phenotypes were NOT observed.
  • F19930 - Specific phenotypes were NOT observed.
  • F20123 - Specific phenotypes were NOT observed.
  • F26318 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

38 mutant lines found