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  3. RAFL05-11-D11

RAFL05-11-D11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01232)

full reading [+] show sequence

Nucleotide sequence: RAFL05-11-D11 - full reading 
ACTTCCTTTC CTTGCTTCAG CTCCCCTTTT CTTATCCGGA AACCAAAAAC 
TTCCGGTGAT AAAACCTCCT TCGTCATCTC TCTACTTCTT GCTGAATTTT 
GTCTGTCTTT GAAGTGGATA AAATGGCGTC AACTTTCACT GCCACATCTT 
CTATTGGTTC AATGGTTGCT CCGAATGGTC ACAAATCTGA TAAGAAACTT 
ATCAGCAAGT TGTCTTCAAG CTCATTTGGA AGGAGACAAA GTGTGTGTCC 
TAGACCCAGA AGATCCAGTT CTGCAATTGT GTGCGCAGCA AAGGAATTAC 
ATTTCAACAA AGATGGGACT ACCATTAGGA GACTTCAAGC TGGTGTCAAC 
AAGCTCGCAG ATCTTGTTGG TGTTACACTT GGACCCAAAG GACGAAATGT 
TGTTCTTGAG AGCAAGTATG GATCACCACG AATTGTTAAT GATGGTGTGA 
CTGTTGCAAG AGAGGTTGAG TTGGAAGACC CGGTTGAGAA CATTGGCGCT 
AAGCTTGTGA GGCAAGCGGC TGCCAAAACC AATGACTTGG CTGGTGACGG 
TACAACAACA TCTGTTGTTC TTGCACAAGG TTTTATCGCT GAGGGTGTCA 
AGGTGGTAGC TGCTGGTGCA AACCCTGTTT TGATCACCAG AGGTATTGAG 
AAGACAGCAA AGGCTTTGGT TACCGAGCTC AAGAAAATGT CTAAGGAGGT 
TGAAGACAGT GAACTTGCAG ATGTTGCAGC TGTTAGTGCG GGTAACAACG 
ACGAAATTGG AAATATGATT GCTGAAGCAA TGAGCAAAGT GGGCAGGAAA 
GGTGTGGTGA CCCTTGAGGA GGGTAAAAGT GCCGAGAACA ACCTCTACGT 
CGTAGAAGGA ATGCAATTTG ACCGTGGTTA TATCTCTCCT TACTTTGTGA 
CAGACAGCGA GAAAATGTCC GTCGAGTTCG ACAATTGCAA GTTACTTCTC 
GTTGACAAGA AAATTACCAA TGCAAGGGAT CTTGTTGGTG TTTTGGAGGA 
TGCAATTAGA GGCGGATACC CAATATTAAT TATTGCTGAA GACATTGAAC 
AAGAAGCTTT AGCGACTCTT GTTGTAAACA AGCTTAGAGG TACACTGAAG 
ATAGCAGCTC TCAGAGCTCC AGGGTTTGGA GAGCGCAAGA GCCAATACCT 
TGATGATATT GCCATTCTAA CTGGAGCAAC TGTGATCCGT GAGGAAGTTG 
GTCTTTCACT TGACAAAGCT GGAAAAGAGG TTCTTGGTAA TGCTTCAAAG 
GTTGTCCTCA CAAAGGAGAC CTCGACCATA GTGGGTGATG GAAGCACACA 
GGATGCAGTG AAAAAGCGTG TTACACAGAT TAAAAATCTT ATTGAGCAAG 
CGGAGCAAGA TTACGAGAAG GAGAAACTCA ATGAGAGAAT TGCAAAGCTC 
TCTGGTGGAG TTGCTGTGAT TCAGGTTGGA GCACAAACTG AGACAGAACT 
CAAAGAGAAG AAGTTGAGAG TTGAAGATGC TCTTAATGCA ACAAAGGCCG 
CTGTCGAGGA AGGTATTGTT GTTGGTGGTG GTTGCACTCT GCTTCGTCTT 
GCTTCCAAGG TTGATGCCAT TAAAGCCACG CTTGATAATG ATGAAGAAAA 
GGTTGGAGCG GATATAGTTA AAAGAGCACT AAGTTACCCC CTAAAACTAA 
TCGCCAAGAA TGCTGGTGTT AATGGAAGTG TAGTTAGCGA GAAGGTGCTT 
TCCAACGATA ACGTGAAATT CGGTTACAAT GCTGCAACCG GCAAGTACGA 
GGATTTGATG GCTGCAGGAA TCATCGATCC AACAAAGGTT GTGAGATGTT 
GCTTGGAACA CGCAGCTTCG GTTGCAAAGA CTTTCTTGAT GTCGGACTGC 
GTTGTTGTTG AGATCAAGGA ACCTGAACCA GTTCCCGTCG GCAACCCAAT 
GGACAACTCA GGATATGGAT ACTAAGAGGA GATAGGCTAA TATTGAAACG 
GATTACTTTA GCTTGCGAGT GTAATGATTT TGAACAAGAG AATGTGTAAT 
GTGAAACTGA AATTTTGAAT TAATCATCAT ATGAATAAAT CATGATTCCC 
TCAATGCTTC

Gene models with high sequence identity

  1. AT1G55490.1 [+] show detail - chaperonin 60 beta
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Chaperonin Cpn60 3.6e-301
FPrintScan Chaperonin Cpn60 1e-65
FPrintScan Chaperonin Cpn60 1e-65
FPrintScan Chaperonin Cpn60 1e-65
FPrintScan Chaperonin Cpn60 1e-65
FPrintScan Chaperonin Cpn60 1e-65
HMMPanther RUBISCO SUBUNIT BINDING-PROTEIN BETA SUBUNIT, 0
HMMPanther Chaperonin Cpn60/TCP-1 0
Gene3D no description 2.7e-75
HMMPfam Chaperonin Cpn60/TCP-1 1.5e-119
superfamily Chaperonin Cpn60/TCP-1 6.1e-71
superfamily GroEL apical domain-like 1.6e-55
superfamily GroEL-intermediate domain like 1.7e-11
HAMAP Chaperonin Cpn60 36.264
PatternScan Chaperonin Cpn60, conserved site 0
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT1G55490.1

Model type
Protein coding
Short Description
chaperonin 60 beta
Curator Summary
encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.
Computational Description
chaperonin 60 beta (CPN60B); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, systemic acquired resistance, cell death, response to cold, chaperone mediated protein folding requiring cofactor; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34209 Blast hits to 34175 proteins in 8723 species: Archae - 804; Bacteria - 21846; Metazoa - 1741; Fungi - 1612; Plants - 841; Viruses - 2; Other Eukaryotes - 7363 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-11-D11 introduced

  • F22202 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found