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  3. RAFL05-11-E04

RAFL05-11-E04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01230)

full reading [+] show sequence

Nucleotide sequence: RAFL05-11-E04 - full reading 
AAATTTTTCT TCTTTTGACC ACCATTGCAT GCTTACCCGA TTGGGAAACT 
CTTTGTTATC CTTATTGATC TTCTTCCAAC GGCGATTTCC CGATCCAAAT 
TTTGGGTTGA TTGAATTCAA AGTTTCCGTT TTTACAAACC AATTTCGGGA 
AAGTTTTCAT CTTTTTTTTA TGGCTGCTTA CGCGAATTAT CTCCGACTCG 
CACGACTTGG AGGAACAAGT TCAGGTGTAA ACCTGTCGAC TCTCAGATCA 
TTCGGTTATT CAAATCCAGC ATTTGACAAG ACTCAAGAGT TTCGCTCCTC 
TTCTTCATCG TTAGTATCAT ATTCTTCGTT CAGACAATTC CACGCCAGAT 
TCATATCTCA GCTTATCAAA ACCAATGGGA AACGTTTGTT TCTTGTCGAT 
ACACTAGCTT TGGTTAGGAG CTTAGAAGCA CAAGGCCTGC CTTCAAAGCA 
AGCCGAGGCA ATAACCGGTG CTATAACTGA AGTTCTTAAC GATAGCTTAG 
GAGTTGTTTC ACAGTTAGTT GTCTCCAAGG GAGAGATGCA GAAAGCTGAA 
ATGACGCAGG AATCAAACTT ATCCAAGTTC AAAAGTGAAA TTAATAGTTC 
ACTGGACCAC CATTTCTCTT TGCTGCAACA CGAGAATGAG AAACTCCGCA 
ATGACATAGA GCGAATCCGC TCTGATATAA GACACGAGAT CGATAAAGTC 
ACAGCAGGAC AACGGTTGGA CCTGAATCTT GAAAAAGGGA GGATAAGAGA 
TGAGTTACAA AATCAAAACG GAGAAACCTC TAACCTTACA AACAAACTTG 
ACCGTGAGAT TCACACTTTG AGAGCTCAGT TAGAAGCAGC CAAGTATGAG 
GTGATCAAGT ACTGTATTGG TACTCTTGTC TCCATCTCAG CCGTTGGTCT 
CGCTGTCCTC CGGATCGTCA TGTAACTCCA TCTGACGGTG CCGGTTTTAA 
AGACCAACTC ATCAATCTTC CCTGTCTTTT AATTACGGGA TGAAAATCTT 
GGTCATGTTA ATTATATATT CGTATGTTTA ATGTAATTGT ATTTCCCCTT 
TTTTATGTGA AAGAAATAAA GAATAACCAG TCTAGTAAAT TTGAACCCTT 
CATGTATATG AATATGATGA TGTTCTTT

Gene models with high sequence identity

  1. AT3G51090.1 [+] show detail - Protein of unknown function (DUF1640)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam DUF1640 1.2e-72
HMMPanther Protein of unknown function DUF1640 2.2e-111
HMMPanther UNCHARACTERIZED 2.2e-111
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT3G51090.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1640)
Computational Description
Protein of unknown function (DUF1640); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1640 (InterPro:IPR012439); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1640) (TAIR:AT2G16460.1); Has 506 Blast hits to 503 proteins in 168 species: Archae - 2; Bacteria - 7; Metazoa - 203; Fungi - 173; Plants - 82; Viruses - 2; Other Eukaryotes - 37 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-11-E04 introduced

  • F18515 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found