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RAFL05-11-E07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02505)

full reading [+] show sequence

Nucleotide sequence: RAFL05-11-E07 - full reading 
AGCTATTTGG TTTCTCTATC CGATTCGTCT CTCTCACGCC CTCACGTTTA 
TCCACCTCAT CCTCAAACCA AACCACAAGA CCTCTTTTTT AAGTAACCAA 
TCACAGAGAG ATAGAGAGAG AGAACAGAGT CAATGTCAAT GGCGTCTATA 
GCTTCTTCTT CTTCCACCAC CCTACTCTCT TCCTCTAGGG TTCTTCTTCC 
CTCCAAGTCT TCTCTTTTAT CTCCTACCGT CTCTTTCCCC AGAATCATAC 
CCTCTTCCTC GGCATCATCC TCTTCTCTCT GTTCCGGGTT CTCCAGTCTC 
GGTTCCCTCA CCACCAACCG CTCCGCCTCA CGCCGGAACT TCGCCGTCAA 
GGCTCAGGCT GATGATTTAC CACTGGTCGG TAATAAGGCG CCTGATTTTG 
AAGCTGAGGC AGTTTTTGAT CAAGAGTTCA TAAAGGTGAA GCTCTCTGAG 
TACATTGGCA AAAAGTATGT TATTCTATTC TTCTACCCTT TGGACTTCAC 
TTTTGTCTGC CCCACTGAGA TTACTGCCTT CAGTGACCGT TATGAAGAAT 
TTGAGAAGCT AAACACCGAA GTATTAGGGG TCTCTGTCGA CAGTGTGTTC 
TCGCATCTTG CGTGGGTCCA AACAGACAGA AAGTCGGGAG GGCTCGGTGA 
TCTGAATTAT CCTCTTGTTT CGGATATCAC TAAATCCATT TCAAAATCGT 
TTGGAGTGCT CATCCCTGAT CAGGGCATTG CACTGAGAGG GCTTTTCATC 
ATAGACAAGG AAGGAGTCAT TCAGCATTCC ACCATCAACA ACCTCGGTAT 
TGGCCGAAGT GTTGATGAGA CAATGAGAAC CCTCCAGGCA TTACAGTATG 
TTCAAGAAAA CCCGGATGAA GTGTGCCCTG CGGGATGGAA GCCAGGGGAG 
AAATCAATGA AACCTGACCC CAAGCTCAGC AAAGAATACT TTTCAGCTAT 
CTAGAGGCTA AGATTGAACA CATGTTTGGT GAAAATTAGC AATCAGAGTT 
GTTTTATTCG TCTTTTCAAA GTTGGAGCAG AGTTGTTATT TTTAGCCAAA 
GAACCTTTGT ATCTATCTCA TCTTTCTCCT GTTTCTGCTA TGTGATTCTC 
CTTAAATTGA ATCAAAAATA AAGAAATCCT TCTTTTCTTT TG

Gene models with high sequence identity

  1. AT5G06290.1 [+] show detail - 2-cysteine peroxiredoxin B
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 8.2e-42
HMMPfam Peroxiredoxin, C-terminal 6.5e-11
ProfileScan Thioredoxin-like 18.068
Gene3D Thioredoxin fold 5.3e-72
superfamily Thioredoxin-like fold 2.2e-66
HMMPanther PEROXIREDOXINS, PRX-1, PRX-2, PRX-3 1e-121
HMMPanther PEROXIREDOXIN 1e-121

See the detailed result >

AT5G06290.1

Model type
Protein coding
Short Description
2-cysteine peroxiredoxin B
Curator Summary
Encodes a 2-Cys peroxiredoxin (2-Cys PrxB) that contains two catalytic Cys residues.
Computational Description
2-cysteine peroxiredoxin B (2-Cys Prx B); FUNCTIONS IN: peroxiredoxin activity, antioxidant activity; INVOLVED IN: response to cold, defense response to bacterium; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G11630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-11-E07 introduced

  • F07402 - Specific phenotypes were NOT observed.
  • F29751 - rosette leaf::present in greater numbers in organism / stem::abnormal / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism / stem internode::decreased length

Mutant lines with disrupted or induced

4 mutant lines found