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RAFL05-11-L02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02516)

full reading [+] show sequence

Nucleotide sequence: RAFL05-11-L02 - full reading 
AATTTTCAAC AAGCAAAGTT CATGATGGGG AATAAGCGAA ATCTCGGATT 
TGTGATCTTC TTCTGGGCTC TGGTGGTTGC AGTAGTAGCC ACGGCCATCG 
AGCATCGTCG CAATGAGAGG ACTAAAGGCG TCAATGGTCT TGACAAGATC 
ATCATCCGCG ACCGTCGTGG CCGATCTGCT GAGGTTTACT TGTATGGAGG 
TCAAGTCAGT TCTTGGAAAA ATGAGAATGG AGAGGAGTTA CTTGTTATGA 
GTAGCAAGGC TATATTCCAG CCTCCAACAC CGATTCGTGG AGGAATTCCA 
GTATTGTTTC CGCAATACAG TAACACCGGT CCACTTCCCT CACATGGATT 
TGTAAGACAG AGGTTCTGGG AGGTTGAGAC TAAACCACCT CCTTTGCCAT 
CACTTTCTAC TGCTCATGTT GACCTGATCG TAAGATCATC CAATGAGGAT 
TTGAAGATCT GGCCGCATAA GTTTGAGTAT AGACTGAGAG TAGCATTGGG 
ACATGATGGA GATTTGACGT TAACATCTCG TGTTAAGAAT ACTGATACAA 
AACCATTTAA CTTCACATTT GCTCTTCACC CCTACTTCGC TGTTTCCAAT 
ATCAGTGAAA TCCATGTCGA AGGATTACAC AACTTGGATT ACCTTGACCA 
ACAAAAGAAC AGAACACGTT TCACTGATCA TGAGAAGGTT ATAACTTTCA 
ATGCTCAACT TGACAGGTTG TACCTAAGCA CTCCAGATCA ACTAAGAATC 
GTGGACCATA AGAAAAAGAA GACTATTGTT GTACACAAGG AGGGACAAGT 
TGATGCCGTG GTGTGGAATC CATGGGATAA GAAAGTATCC GATTTGGGAG 
TTGAAGACTA TAAGCGTTTT GTAACGGTGG AAAGCGCGGC TGTCGCGAAA 
CCGATCACAG TGAACCCCGG CAAAGAATGG AAAGGAATAC TCCATGTTTC 
TGTGGTTCCA TCAAATCGGA AAGCTTGACC CTATAAAAGT CTTGCATTCA 
TCATCCTCAT CCTTTAAAAA AAAAACTTAA AACTGTCTTT ATTAAAGTAT 
ACTTAATGTT CCCGAGAGAC ATCACATGGT GAACACAAAG TTAGTTGGGT 
TCCAAACTGG ACTCTTGACC AGTTTTATTG TTTTGTAACT TTAGCATTCA 
TGAATAAAAA AAGTGCGTTA ATTG

Gene models with high sequence identity

  1. AT4G25900.1 [+] show detail - Galactose mutarotase-like superfamily protein
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
HMMPfam Aldose 1-epimerase 3.9e-62
HMMPanther APOSPORY-ASSOCIATED PROTEIN C-RELATED 6.6e-129
superfamily Glycoside hydrolase-type carbohydrate-binding 1.1e-73
Gene3D Glycoside hydrolase-type carbohydrate-binding, subgroup 1.6e-74

See the detailed result >

AT4G25900.1

Model type
Protein coding
Short Description
Galactose mutarotase-like superfamily protein
Computational Description
Galactose mutarotase-like superfamily protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G57330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-11-L02 introduced

  • F10923 - rosette leaf::dark green / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / sporophyte vegetative stage::decreased speed / stem::abnormal / stem internode::decreased length / stem::abnormal / root::present in greater numbers in organism
  • F16311 - Specific phenotypes were NOT observed.
  • F20113 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found