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RAFL05-11-L07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01269)

full reading [+] show sequence

Nucleotide sequence: RAFL05-11-L07 - full reading 
ATTCTCACTT ACTTCTTTTC TTTTTTTGTG TTCTTGTTTA GAAGAAGCAA 
TGGCCACTTC AGCAATCCAA CACTCTTCTT TCGCTGGCCA AACGACCCTA 
AAGCCATCCA ACGATCTCCT CCGCAAAATC GGAGCCTCCA ATGGCGGTGG 
CCGCATCATC ATGCGTCGTA CCGTCAAGTC TACTCCTCAG AGCATCTGGT 
ACGGACCAGA CCGTCCCAAA TACCTAGGAC CATTTTCCGA AAACACACCA 
TCATACCTAA CCGGAGAATA CCCTGGAGAC TACGGTTGGG ACACCGCTGG 
TCTCTCAGCC GATCCAGAAA CATTCGCAAA GAATCGTGAG CTCGAAGTGA 
TCCACAGTAG ATGGGCAATG TTGGGAGCTT TAGGCTGCAC CTTCCCTGAA 
ATTCTCTCAA AAAACGGAGT CAAATTCGGT GAAGCCGTGT GGTTCAAGGC 
AGGATCTCAA ATCTTCTCAG AAGGAGGGCT TGACTACCTC GGAAACCCTA 
ACTTGATCCA CGCGCAAAGC ATATTAGCTA TATGGGCGTG TCAAGTTGTG 
CTAATGGGAT TCATTGAAGG GTACAGAATC GGAGGTGGTC CTCTTGGGGA 
AGGGCTTGAC CCGCTTTACC CGGGCGGGGC CTTCGACCCG TTGAACTTAG 
CGGAGGATCC AGAAGCGTTT TCAGAGTTGA AAGTGAAGGA GCTTAAAAAC 
GGTCGTCTTG CTATGTTCTC AATGTTTGGA TTCTTTGTCC AAGCCATAGT 
TACCGGTAAA GGTCCGATCG AAAATCTGTT CGATCACATT GCAGACCCTG 
TGGCTAACAA TGCTTGGGCT TACGCCACCA ACTTCGTCCC CGGAAAATAG 
AGTTTGATCG GATAATTTAT GTAAATTATA TCTTTTAAAC ATTTATCAAT 
GCATTAAAGT TATCCCT

Gene models with high sequence identity

  1. AT3G27690.1 [+] show detail - photosystem II light harvesting complex gene 2.3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Chloroa_b-bind 4.9e-49
HMMPanther Chlorophyll A-B binding protein 1.7e-189
superfamily Chlorophyll a-b binding protein 1.4e-80

See the detailed result >

AT3G27690.1

Model type
Protein coding
Short Description
photosystem II light harvesting complex gene 2.3
Curator Summary
Encodes Lhcb2.4. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.
Computational Description
photosystem II light harvesting complex gene 2.3 (LHCB2.3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 2373 Blast hits to 2310 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2058; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-11-L07 introduced

  • F07101 - Specific phenotypes were NOT observed.
  • F07131 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found