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  3. RAFL05-11-L11

RAFL05-11-L11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01209)

full reading [+] show sequence

Nucleotide sequence: RAFL05-11-L11 - full reading 
GTGTGTTCTT GCTTTGAGCG AAACCCTAGA ATCGGTCTTA ACCCATTTGA 
GCAGAGATGC TGCGAGTAGC AGGAAGGAGG CTTTTTTCTG TTTCGCAGAG 
ATCATCGACG GCGACCTCCT TCGTCCTTTC CCGTGACCAT ACCCTTTCCG 
ATGGAGGCAA CTCCTCTTCC GCTTCTAGAT CTGTCCCCTC TGCAGATCTC 
TCATCTTTCA ATTCTTACCA CCGGAGCGTT ATAAGAGGTT TTGCTTCTCA 
AGTCATTACT CAGGGAAATG AGATAGGTTT TGGTTCGGAA GTCCCAGCCA 
CAGTCGAAGC TGTCAAAACA CCTAACTCAA AGATTGTCTA TGACGACCAT 
AACCATGAGC GTTACCCACC TGGTGACCCT AGCAAGCGGG CATTCGCCTA 
TTTTGTCTTG TCGGGTGGAA GGTTTGTTTA TGCCTCTGTT CTCCGCCTGC 
TTGTTCTGAA GCTTATTGTG AGCATGTCTG CAAGTAAAGA TGTCCTTGCC 
CTTGCATCCC TCGAGGTTGA CCTAGGGAGC ATAGAACCAG GAACTACCGT 
GACAGTCAAG TGGCGTGGAA AGCCCGTCTT CATCAGGCGA AGAACAGAAG 
ATGACATCAA GCTGGCCAAT AGTGTGGATG TTGGATCCCT GAGGGACCCA 
CAAGAAGACT CGGTTAGAGT CAAGAATCCA GAATGGTTGA TCGTGGTTGG 
AGTATGCACT CATTTGGGGT GCATCCCCTT GCCTAATGCT GGTGATTATG 
GTGGTTGGTT TTGTCCGTGT CACGGATCAC ATTACGATAT ATCTGGAAGA 
ATTAGGAAAG GTCCTGCACC ATACAACCTG GAAGTACCGA CCTACAGCTT 
CTTGGAAGAG AATAAATTAC TCATTGGTTA ATGAATAAAG CACAACAGTC 
CGAGTGTCAT GGTCTGGATG ATCTTAAATC TGTTTTTGTT TTTATATTTT 
CCGGCATTTT AGCGTGCAAG TTCGCTTTCC TCACACTTTG GGCTCAGCAA 
AAATTGGCTT GTTTTGCTGA ATAATACAAA CTTGTCATTG TATGACTTAG 
TATCTGTCTC ATCTGGTGAA AATACATGTT

Gene models with high sequence identity

  1. AT5G13440.1 [+] show detail - Ubiquinol-cytochrome C reductase iron-sulfur subunit
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Ubiquinol-cytochrome c reductase, iron-sulphur subunit 6.2e-73
HMMPfam Rieske [2Fe-2S] iron-sulphur domain 3e-16
HMMPfam Ubiquinol cytochrome reductase, transmembrane domain 4.9e-16
Gene3D Rieske [2Fe-2S] iron-sulphur domain 4.5e-49
ProfileScan Rieske [2Fe-2S] iron-sulphur domain 17.546
superfamily Rieske [2Fe-2S] iron-sulphur domain 3.9e-46
superfamily Ubiquinol cytochrome reductase, transmembrane domain 6.3e-16
HMMPanther Rieske iron-sulphur protein 2.9e-136
FPrintScan Rieske iron-sulphur protein, C-terminal 3.2e-17
FPrintScan Rieske iron-sulphur protein, C-terminal 3.2e-17
FPrintScan Rieske iron-sulphur protein, C-terminal 3.2e-17

See the detailed result >

AT5G13440.1

Model type
Protein coding
Short Description
Ubiquinol-cytochrome C reductase iron-sulfur subunit
Computational Description
Ubiquinol-cytochrome C reductase iron-sulfur subunit; FUNCTIONS IN: metal ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome c reductase, iron-sulphur subunit (InterPro:IPR006317), Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske iron-sulphur protein, C-terminal (InterPro:IPR005805), Rieske iron-sulphur protein (InterPro:IPR014349), Ubiquinol cytochrome reductase, transmembrane domain (InterPro:IPR004192); BEST Arabidopsis thaliana protein match is: Ubiquinol-cytochrome C reductase iron-sulfur subunit (TAIR:AT5G13430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-11-L11 introduced

  • F04109 - seed::increased size / seed::increased length
  • F20447 - Specific phenotypes were NOT observed.
  • F21832 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::abnormal / stem::decreased thickness / whole plant::decreased height / stem::abnormal / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::abnormal
  • F23739 - Specific phenotypes were NOT observed.
  • F29129 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found