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  3. RAFL05-11-M07

RAFL05-11-M07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02519)

full reading [+] show sequence

Nucleotide sequence: RAFL05-11-M07 - full reading 
ATAAATGCTC TTCTCCTCCG ATCTCTCCGC CATAAAATCT ACTCTTTCTT 
CTTCTGGGTG TTCAAAGAAT TAGTCGTTCT CGCGTATTCA CTTTCCATGG 
CGGGCTTTCT CTCCGTTGTC CGGCGCGTGT ACCTCACTCT CTACAATTGG 
ATCGTCTTTG CTGGATGGGC TCAGGTTTTG TACTTAGCGA TAACGACGTT 
GAAGGAAACG GGTTATGAGA ATGTCTATGA CGCCATTGAG AAGCCTCTCC 
AGCTTGCTCA GACTGCCGCC GTTCTCGAGA TTCTTCATGG ATTAGTAGGT 
TTGGTCAGAT CTCCTGTTTC TGCAACTCTG CCACAGATAG GTTCAAGGCT 
ATTTCTCACT TGGGGCATCC TATACAGTTT TCCAGAGGTC CGATCTCATT 
TTCTTGTTAC GTCGCTGGTC ATAAGCTGGT CTATCACAGA GATTATTCGC 
TACTCATTCT TCGGCTTTAA GGAAGCTCTA GGCTTTGCAC CTTCATGGCA 
CTTGTGGCTC AGATACAGCA GCTTTTTATT GCTATACCCT ACCGGTATCA 
CCAGCGAAGT TGGTCTTATC TACCTTGCCT TACCACACAT CAAGACATCG 
GAGATGTACA GCGTTAGGAT GCCTAACATA TTGAACTTCT CATTTGACTT 
CTTCTATGCA ACGATACTCG TCCTTGCAAT CTATGTCCCA GGTAGCCCAC 
ACATGTACAG GTACATGCTT GGTCAGCGAA AGAGAGCTCT CTCCAAATCC 
AAGAGGGAAT AAAAGAAAAG ATTTAGAAAG AGACGAAAAA GCTCATCAAC 
TGTTTTCTCC TCTTGTCTTG TTCGTTCATG TACTACTAGT CTACTACTAC 
AACTTGTCTT TTGTTTAGCT TGTTTGAGCT TTTACTTCCT CGGCGATTAC 
TTGAACTTAC ATGCAGCAGG ATACTATTAA GTGTAATGTG GTTTCTAAAT 
TAATAAGAAA ATCATTGGTT CCTT

Gene models with high sequence identity

  1. AT5G10480.1 [+] show detail - Protein-tyrosine phosphatase-like, PTPLA
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein-tyrosine phosphatase-like, PTPLA 4.1e-60
HMMPanther Protein-tyrosine phosphatase-like, PTPLA 1.9e-87

See the detailed result >

AT5G10480.1

Model type
Protein coding
Short Description
Protein-tyrosine phosphatase-like, PTPLA
Curator Summary
Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early mitosis and inhibited Arabidopsis seedling growth. Localized in the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids).
Computational Description
PASTICCINO 2 (PAS2); CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: Protein-tyrosine phosphatase-like, PTPLA (TAIR:AT5G59770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-11-M07 introduced

  • F23315 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found