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RAFL05-11-O16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02522)

full reading [+] show sequence

Nucleotide sequence: RAFL05-11-O16 - full reading 
AACACACTCT GAGTCTTGAA GGTCAACAAC GTCGAGAATA ATGGCATCAT 
CTCTTTGTGC TTCTTCTGCC ATCGCTGCCA TTTCTTCTCC AAGTTTCTTG 
GGTGGTAAGA AACTGAGGCT GAAGAAGAAG TTGACTGTTC CAGCTGTGTC 
CAGGCCAGAT GCGTCGGTGC GCGCCGTCGC AGCTGATCCA GATAGACCAA 
TCTGGTTCCC GGGAAGCACT CCTCCAGAGT GGCTAGACGG TAGCCTCCCT 
GGTGACTTCG GATTTGATCC TCTTGGTCTT TCATCGGACC CGGACAGTCT 
AAAATGGAAC GTACAAGCCG AGATAGTCCA CTGCCGATGG GCTATGCTAG 
GAGCCGCCGG GATATTCATC CCAGAGTTCC TAACGAAGAT CGGAATCCTC 
AACACTCCGT CATGGTACAC GGCGGGAGAG CAAGAGTATT TCACGGACAA 
AACCACACTC TTTGTCGTTG AGCTCATTTT GATCGGATGG GCAGAAGGAC 
GTAGATGGGC CGATATCATC AAGCCCGGTA GCGTCAACAC TGACCCAGTC 
TTCCCAAACA ACAAACTGAC GGGCACAGAC GTTGGTTACC CAGGTGGGTT 
ATGGTTCGAC CCGTTGGGTT GGGGATCCGG TAGCCCGGCT AAGCTCAAGG 
AGTTGAGGAC CAAGGAGATC AAGAACGGAA GGTTGGCTAT GTTGGCAGTG 
ATGGGTGCTT GGTTCCAACA CATCTACACT GGCACTGGTC CTATTGATAA 
CCTTTTTGCA CATCTTGCTG ATCCTGGTCA CGCCACAATC TTCGCTGCTT 
TCACACCCAA GTGAGACAAC GAAAAAGGGT TATGGGGAGG TGAATGCGTT 
TGTGTGTGAT CATGTTTGTA CAAATATCAT TTTGAACTTA AAATTATTAT 
GTACTTTATA TAAATTGTGG TCGAATGCAA ATTAAGGTTC CCCGT

Gene models with high sequence identity

  1. AT3G61470.1 [+] show detail - photosystem I light harvesting complex gene 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Chlorophyll A-B binding protein 1.4e-126
HMMPfam Chloroa_b-bind 1.1e-52
superfamily Chlorophyll a-b binding protein 1.4e-66

See the detailed result >

AT3G61470.1

Model type
Protein coding
Short Description
photosystem I light harvesting complex gene 2
Curator Summary
Encodes a component of the light harvesting antenna complex of photosystem I.
Computational Description
photosystem I light harvesting complex gene 2 (LHCA2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-11-O16 introduced

  • F15501 - Specific phenotypes were NOT observed.
  • F28904 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found