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RAFL05-12-B22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09315)

full reading [+] show sequence

Nucleotide sequence: RAFL05-12-B22 - full reading 
AATCCTTTTC CTTCTTCTTG TTGCCCTAGT ACGAGAGGAC CGGGAAGGAC 
GCAATATATA GGATACTAGA TAGAGAGTGA CTGAAGGAGA GAAAAACAAA 
AATGGCGATT GTTTCCGTCT CTAACTCTTT TCTCACTTTC AATTCTCCCA 
ATCAGCTCCG ATTTAGCCGA AGAAGATTCT CTGCCATGGC TTCTTCAACT 
ACTGGAGTGA GAGTCGCTGA AGGAGAAGGC AATTTGCCAA AACTTGTCCT 
TACTTCTCCT CAGAACAGCG AGGCTGAGAT ATATCTCTTC GGAGGCTGCA 
TTACTTCTTG GAAAGTTGCG AGCGGTAAAG ATCTTCTTTT TGTCAGACCA 
GATGCTGTCT TCAATAAGAT TAAGCCCATT AGCGGAGGGA TTCCACATTG 
TTTTCCACAG TTTGGACCTG GGCTAATTCA ACAGCATGGG TTTGGAAGGA 
ACATGGACTG GTCTGTTGTC GATTCCCAGA ATGCAGATGA CAATGCTGCT 
GTTACTCTTG AGCTTAAGGA TGGTCCCTAT AGTCGAGCCA TGTGGGACTT 
TGCTTTCCAG GCTCTATACA AGGTCATTGT TGGCGCGGAC TCCCTTTCCA 
CTGAGCTAAA GATTACAAAC ACAGACGATA AACCATTTTC TTTCAGCACT 
GCGTTGCATA CTTACTTCCG TGCTTCTTCT GCGGGGGCCT CCGTGAGAGG 
TCTAAAGGGT TGTAAAACTC TCAATAAGGA TCCAGACCCT AAGAACCCAA 
TAGAGGGTAA AGAAGACAGG GATGCAGTCA CTTTTCCTGG ATTTGTGGAT 
ACCGTCTATC TTGATGCTCC CAATGAATTG CAGTTTGATA ATGGCTTGGG 
TGATAAAATA ATCATCAAAA ACACAAATTG GTCGGATGCG GTCTTGTGGA 
ACCCGCATAC TCAGATGGAG GCTTGTTACA GAGACTTTGT GTGCGTGGAA 
AATGCAAAGC TTGGGGATGT CAAGCTAGAG CCGGGACAGT CTTGGACTGC 
AACACAACTT CTCAGCATCA GTTGAAAACA TTGTACTTTA AACTTATAAT 
GTCCAGTGGA TCCATTTTCT TAAGCAATAA AAGTTTTATT TCCTCTCCCT

Gene models with high sequence identity

  1. AT5G66530.1 [+] show detail - Galactose mutarotase-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther APOSPORY-ASSOCIATED PROTEIN C-RELATED 2e-89
superfamily Glycoside hydrolase-type carbohydrate-binding 1.8e-60
Gene3D Glycoside hydrolase-type carbohydrate-binding, subgroup 1.8e-61
HMMPfam Aldose 1-epimerase 1.3e-42

See the detailed result >

AT5G66530.1

Model type
Protein coding
Short Description
Galactose mutarotase-like superfamily protein
Computational Description
Galactose mutarotase-like superfamily protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G57330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-12-B22 introduced

  • F02901 - seed::decreased size / seed::decreased length
  • F10826 - Specific phenotypes were NOT observed.
  • F13205 - Specific phenotypes were NOT observed.
  • F14948 - Specific phenotypes were NOT observed.
  • F23243 - Specific phenotypes were NOT observed.
  • F26507 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found