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RAFL05-12-D03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87468)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-12-D03 - 5 prime EST 
AAAAAAGTTG GACATCCTTG CTTTTGGTCT AACTTTCTCT CTCTTGCTTC 
TACGCTTCTT CTTGTGGCGT AGATTGTTAT AGAGAGGGAA ACCAAAAAAG 
GGAATCTCAA AAGCTCGAGT TCACAGATTT GACCCGAGTC TTTAATCCAA 
TCTGCTGGTT CGTTTTCCAC ATTCAAACTC GACTCTTGAA TATCAAATCA 
GAAGTCTTTG CTATGGCTGC TACCGCTGCT GCTTCTGTTG TCCGTTACGC 
ACCTGAGGAT CATACTCTTC CCAAGCCCTG GAAAGGCCTT ATCGATGATA 
GAACTGGTTA CTTGTACTTT TGGAATCCTG AGACCAATGT TACTCAGTAC 
GAGAAACCAA CCCCCTCTCT ACCTCCTAAG TTTTCTCCCG CCGTTTCTGT 
TAGCTCTTCC GTTCAGGTTC AACAAACTGA TGCCTATGCT CCTCCCAAGG 
ATGACGATAA GTACTCCAGA GGCTCTGAAC GNGTGTNCAG GTTTTCTGAG 
GGTGGCAGGA GTGGACCGCC TTATTCNAAC GGTGCTGCTA ATGGAGTTGG 
GGATTCTGCT TATGG

Gene models with high sequence identity

  1. AT3G01540.4 [+] show detail - DEAD box RNA helicase 1
    E-value: 0; Score: 99.47

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-12-D03 - 3 prime EST 
ACCAATCTCT GAGCTGCAAT AATAAATAAG ATGAAATACA AACTGTAAGA 
TATCAATTGT AGTTTTGAGC GTAAATTTCC AATGGGAGGG AACAGTCTTC 
TTGGTCTTGT TTTTTTTTCT TTTGTTTCTT CATCGGCCAA AAAATATATA 
ATGTCACAAT GATAAGGGAA ATCCCCCACA ACACAATCTT CTGTCACTTG 
GCTTTATCAG AGCTTTGTAT CTCTCTTTTC ATCTGTGTTT CATCATCATC 
G

Gene models with high sequence identity

  1. AT3G01540.3 [+] show detail - DEAD box RNA helicase 1
    E-value: 2e-140; Score: 100.00

AT3G01540.3

Model type
Protein coding
Short Description
DEAD box RNA helicase 1
Curator Summary
RNA HELICASE DRH1
Computational Description
DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01540.4

Model type
Protein coding
Short Description
DEAD box RNA helicase 1
Curator Summary
RNA HELICASE DRH1
Computational Description
DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-12-D03 introduced

  • F12933 - Specific phenotypes were NOT observed.
  • F14243 - Specific phenotypes were NOT observed.
  • F25131 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found