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  3. RAFL05-12-F16

RAFL05-12-F16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12226)

full reading [+] show sequence

Nucleotide sequence: RAFL05-12-F16 - full reading 
GTCTTGGCAT CCTCGTCCTC TTCAGCAAAA CTCGTCTCTC TTGCACTCCA 
AAAAGCAACC ATGTCTGCTT TTGTCGGCAA ATACGCAGAT GAGCTGATAA 
AGACGGCTAA GTACATTGCC ACACCGGGAA AGGGCATTTT GGCAGCAGAC 
GAGAGCACGG GAACTATTGG GAAACGATTC GCCAGCATCA ATGTTGAGAA 
CATTGAGTCC AACCGCCAAG CTCTCCGTGA GCTCCTCTTC ACGTCCCCTG 
GCACTTTCCC TTGCCTCTCC GGTGTTATCC TCTTCGAGGA AACCCTCTAC 
CAGAAAACCA CGGATGGCAA ACCCTTCGTT GAGCTCCTCA TGGAAAACGG 
AGTTATCCCT GGAATCAAAG TGGACAAGGG TGTGGTTGAT CTAGCAGGAA 
CCAATGGCGA GACCACTACT CAGGGTCTAG ATTCACTTGG TGCACGTTGC 
CAGGAGTATT ACAAGGCAGG AGCTCGGTTT GCAAAATGGC GTGCAGTCCT 
CAAGATTGGG GCCACCGAGC CAAGCGAGCT CTCTATCCAA GAGAACGCCA 
AGGGGCTAGC CCGCTATGCC ATCATCTGCC AGGAGAATGG ACTCGTCCCA 
ATCGTCGAGC CAGAGGTACT GACCGACGGG AGCCATGACA TCAAGAAATG 
TGCAGCGGTG ACCGAGACCG TTCTTGCTGC CGTGTACAAG GCCTTGAACG 
ACCACCATGT CCTCCTCGAA GGCACTCTGC TTAAACCGAA CATGGTCACT 
CCCGGCTCTG ACAGCCCAAA GGTTGCACCG GAAGTGATAG CGGAATACAC 
AGTGACTGCT CTGCGCCGCA CAGTCCCACC TGCAGTTCCA GGAATCGTGT 
TCCTCTCAGG CGGACAGAGT GAAGAGGAAG CAACACTAAA TCTGAACGCA 
ATGAACAAGC TCGATGTGTT GAAGCCATGG ACTCTCACTT TCTCATTTGG 
CCGAGCCCTC CAACAAAGCA CTCTCAAGGC TTGGGCAGGT AAGACAGAGA 
ATGTAGCCAA AGCTCAGGCC ACTTTCCTGA CCAGGTGCAA GGGTAACTCG 
GACGCTACCC TCGGGAAATA CACCGGCGGG GCTTCTGGTG ACTCGGCCGC 
CTCTGAGAGC TTGTATGAGG AAGGATACAA GTATTAGGAG CGTTTAAATA 
CGGGTGTCGC CTTTTATACG ATTTGAATAT ATGTCAAATG TTTCGTAGGC 
GTTTAACTGT TTAAATTTTT ATCGATTTGG TTTAGCGTCT GTGTAATGTT 
CTTAAACTGT GTTGTGTTTT TTGTGATGGT TTCTATAATA TTTTCGCGCC 
AT

Gene models with high sequence identity

  1. AT4G26530.2 [+] show detail - Aldolase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Aldolase-type TIM barrel 3e-151
superfamily Aldolase 1.9e-165
HMMPanther Fructose-bisphosphate aldolase, class-I 4.5e-275
HMMPfam Fructose-bisphosphate aldolase, class-I 5e-175
PatternScan Fructose-bisphosphate aldolase, class-I 0

See the detailed result >

AT4G26530.2

Model type
Protein coding
Short Description
Aldolase superfamily protein
Computational Description
Aldolase superfamily protein; FUNCTIONS IN: fructose-bisphosphate aldolase activity; INVOLVED IN: glycolysis, metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT4G26520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-12-F16 introduced

  • F02310 - Specific phenotypes were NOT observed.
  • F11730 - seed::increased size / seed::increased length
  • F23321 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found