1. Home
  2. Full-length cDNAs
  3. RAFL05-12-G13

RAFL05-12-G13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01208)

full reading [+] show sequence

Nucleotide sequence: RAFL05-12-G13 - full reading 
AACCCTAGAA AAGGCTTCAC GCCCGATTTC TTTTTTCCCC AGAAAAAGGC 
TTCACTTCCG TTCGTTGTTC TTCATCGGTC TGCGCCGCCT CGCACATCGT 
TTCACCTTTC TCAGAATCTC TCTTCCCGTC GATTAGTTTC CTCAGAGGTT 
GCGATTTGTT GAAAACCTTG ATTTAGACTA TGAAGTCTCT TAATGATCTT 
CCTGCGCCCA AATCAACCAC TACCACGTAT TATGATCATT CTAATGATGC 
TTGGTTCAAA AACCGAGTCA CTGAATCCGA GACGGTGAAA TCCTCCAGTA 
TCAAATTTAA AGTGGTGCCT GCTTACCTGA ATCGTCAAGG TTTACGTCCG 
AAGAATCCAG AGGATTTTGG CGATGGTGGT GCTTTCCCGG AGATTCATCT 
TCCTCAGTAT CCTCTTCTTA TGGGTAAGAA TAAATCCAAT AAGCCTGGAG 
CTAAGACTCT CCCTGTTACT GTCGATGCTC AGGGAAACGT GGTCTTTGAC 
GCTATAGTGA GGCAGAATGA GAACTCGAGG AAGATTGTTT ATTCTCAGCA 
TAAGGATATT ATTCCAAAGT TTCTGAAAAA CGAGGGAGAC TTGGGTACTG 
TTGTTGATGA AGAGGAGGAA TTGCAGAAGG AGATTCAGGA GACTGCTGAA 
GAAACGAAAG CTGCCATTGA GAAGATTGTG AATGTGAGAC TGAGTGCAGC 
GCAGCCTAGT AATATAGCAA GGCAATCGGG AGATTCACAG TACATTAAAT 
ATAAGCCATC CCAGCAATCT TCTGCCTTCA ATTCTGGTGC TAAAGAGAGG 
ATCATTAGGA TGGTGGAGAT GCCTGTAGAT CCACTTGATC CACCAAAGTT 
CAAGCACAAG AGAGTCCCAA GGGCTTCTGG TTCTCCGCCT GTTCCGGTCA 
TGCATTCACC GCCCAGGCCT GTTACCGTCA AGGACCAGCA AGACTGGAAA 
ATCCCTCCTT GTATCTCCAA TTGGAAGAAT CCGAAAGGTT ACACAATCCC 
TCTTGACAAA CGTCTAGCTG CTGATGGAAG GGGCCTACAA GACGTTCAGA 
TCAATGATAA CTTTGCCAAG TTATCAGAGG CCCTCTATGT AGCTGAGCAG 
AAAGCTAGAG AGGCTGTTTC AATGCGTTCC AAGGTGCAAA AAGAGATGGT 
GATGAAGGAC AAGGAAAGGA AAGAGCAGGA ATTGAGGGCT CTTGCCCAAA 
AAGCTCGCTC CGAAAGAACC GGTGCTGCTA TGAGTATGCC TGTCTCATCT 
GACAGGGGTA GGAGTGAAAG TGTTGACCCA AGAGGTGATT ATGACAACTA 
TGACCAGGAT AGAGGAAGGG AAAGAGAAAG GGAAGAGCCT CAAGAGACGA 
GGGAGGAGAG GGAAAAAAGG ATTCAGAGAG AAAAGATACG AGAAGAGCGT 
CGCAGGGAAA GAGAGAGGGA GAGAAGGTTG GATGCCAAAG ATGCTGCCAT 
GGGGAAGAAG AGCAAGATCA CCAGAGACAG AGACCGTGAC ATCAGTGAGA 
AAGTTGCTCT TGGAATGGCA TCTACTGGAG GAAAAGGTGG TGGTGAAGTT 
ATGTATGATC AACGTCTGTT TAACCAAGAC AAAGGAATGG ACTCTGGTTT 
CGCTGCTGAT GACCAATACA ACTTATACGA CAAAGGCTTG TTCACTGCAC 
AACCAACTCT TTCGACTTTG TACAAGCCAA AGAAGGATAA CGATGAAGAA 
ATGTATGGAA ACGCTGATGA GCAGCTCGAT AAGATCAAGA ATACTGAGAG 
GTTTAAGCCT GACAAAGCTT TCACAGGGGC TTCAGAGAGG GTGGGTAGTA 
AGAGAGACCG ACCTGTTGAG TTTGAGAAGG AAGAGGAACA AGATCCTTTC 
GGTCTTGAGA AGTGGGTTTC TGATTTAAAG AAGGGTAAGA AACCTTTGGA 
CAAGATCGGG TCTGGTGGAA CTATGAGAGC AAGTGGCGGT GGTGGTAGCT 
CTTCAAGGGA CGATGACCAC GGCGGTTCTG GTCGAACCAA GATCAATTTC 
GAACGCAGTG ACCGGCGTTA AAAGTCAAGA CAAAGAAAAA GCTCAGTAAC 
TGATCTTTGA TTTCAATATA TAACTTGTTA TTTTGGATCT GTTAAAACAG 
TTTGCTTTGG ATTATCAGTA TTTATGTTGT TGTGAGTCTC TTAAACTACT 
CGAATACAAT CTTTCAGCTT CATAATATCA GATCTTTTGA G

Gene models with high sequence identity

  1. AT1G77180.1 [+] show detail - chromatin protein family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam SKI-interacting protein SKIP, SNW domain 2.1e-66
HMMPanther SKI-interacting protein, SKIP 1.5e-255
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT1G77180.1

Model type
Protein coding
Short Description
chromatin protein family
Curator Summary
Encodes a putative transcriptional factor. Shows transcriptional activator activity in yeast. Involved in response to abscisic acid, salt and osmotic stress.
Computational Description
SKIP; FUNCTIONS IN: transcription activator activity; INVOLVED IN: response to salt stress, response to mannitol stimulus, RNA splicing, response to abscisic acid stimulus; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015); Has 9534 Blast hits to 6488 proteins in 453 species: Archae - 14; Bacteria - 426; Metazoa - 4688; Fungi - 1154; Plants - 570; Viruses - 47; Other Eukaryotes - 2635 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-12-G13 introduced

  • F25401 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found