1. Home
  2. Full-length cDNAs
  3. RAFL05-12-I12

RAFL05-12-I12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02544)

full reading [+] show sequence

Nucleotide sequence: RAFL05-12-I12 - full reading 
ATCACAAACA CAAAGCAACA ACAAACACCA CAAAAGCAAA AGAAGAAACA 
AACGCAAGAG TTCTCAAGCA AGCTCAAACA TGGCACTAAT GAAGAAGAGT 
CTCTCTGCTG CTCTTCTCTC ATCACCACTT CTGATCATAT GTCTTATCGC 
ATTGCTCGCT GATCCGTTTT CAGTCGGTGC TCGCCGGTTA TTGGAGGATC 
CTAAACCGGA GATACCAAAA TTGCCTGAGC TACCTAAATT CGAAGTTCCC 
AAGTTGCCGG AGTTCCCTAA ACCAGAGTTG CCCAAGTTAC CCGAATTTCC 
AAAGCCTGAG TTGCCAAAGA TCCCGGAGAT TCCAAAGCCA GAGTTACCAA 
AGGTACCGGA GATTCCAAAG CCTGAGGAAA CTAAACTGCC AGATATTCCC 
AAGCTTGAAT TGCCCAAGTT TCCGGAAATT CCAAAACCTG AGCTCCCAAA 
GATGCCAGAG ATTCCAAAAC CTGAGTTACC AAAGGTACCG GAGATTCAGA 
AGCCCGAGTT ACCAAAAATG CCGGAGATTC CAAAGCCTGA ATTACCAAAG 
TTTCCAGAGA TTCCAAAGCC TGATTTGCCA AAGTTTCCAG AGAATTCAAA 
GTCTGAGGTG CCTAAGCTAA TGGAGACTGA AAAGCCTGAG GCTCCTAAGG 
TGCCAGAGAT TCCAAAGCCT GAGTTGCCAA AGTTGCCAGA AGTTCCCAAG 
CTTGAGGCTC CTAAGGTACC AGAGATCCAG AAGCCGGAGT TGCCCAAAAT 
GCCGGAGTTA CCTAAGATGC CGGAGATTCA GAAACCTGAG TTGCCAAAGT 
TGCCAGAAGT TCCCAAGCTT GAGGCTCCTA AGGTACCGGA GATCCAGAAG 
CCGGAGTTGC CCAAAATGCC GGAGTTACCT AAGATGCCGG AGATTCAGAA 
ACCCGAGTTG CCCAAGATGC CGGAGATTCA GAAGCCTGAG TTGCCGAAGG 
TGCCAGAGGT TCCAAAGCCC GAATTGCCAA CGGTTCCAGA GGTTCCAAAG 
TCTGAGGCTC CTAAGTTTCC AGAGATTCCA AAGCCTGAAC TGCCGAAGAT 
TCCAGAAGTT CCAAAACCTG AACTGCCCAA GGTTCCAGAA ATTACAAAAC 
CTGCAGTTCC AGAGATTCCA AAGCCAGAGC TACCGACGAT GCCTCAACTT 
CCCAAGTTGC CGGAATTCCC AAAAGTTCCC GGAACTCCTT AAGCGAAGAG 
AAGGCCCAGC TACTTTGAAG CCCATCCCAC AATCTTAAAG TACCGTTTTA 
CCGTTATACC ATTTGTCTAT TTGCAGAGAT GCACTTATGT CTGTCTACAT 
CATTGTTTCC TTAGTAAAAA CCATGTCGTA TGGTTGGTCT CATAGTCATA 
GTTCTTGTTT TTTTTGGGTA AAGACTATAC ACTTATACTT GTATAATTGT 
ATCCTGTTAT ATTTTGTATT GTTTGTTTCC ATACAGATTT CGTTGTATTT 
GATATACTTT TTAATTGATT ATGTTACTTA TTTAA

Gene models with high sequence identity

  1. AT5G09530.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
    E-value: 0; Score: 99.87

 

InterPro Scan Digest

Program Description E-value
FPrintScan PRICHEXTENSN 2.6e-10
FPrintScan PRICHEXTENSN 2.6e-10
FPrintScan PRICHEXTENSN 2.6e-10
FPrintScan PRICHEXTENSN 2.6e-10
FPrintScan PRICHEXTENSN 2.6e-10
FPrintScan PRICHEXTENSN 2.6e-10

See the detailed result >

AT5G09530.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G09520.1); Has 56710 Blast hits to 18930 proteins in 1860 species: Archae - 251; Bacteria - 17598; Metazoa - 17723; Fungi - 4561; Plants - 6151; Viruses - 953; Other Eukaryotes - 9473 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-12-I12 introduced

  • F18545 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found