1. Home
  2. Full-length cDNAs
  3. RAFL05-12-L08

RAFL05-12-L08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09324)

full reading [+] show sequence

Nucleotide sequence: RAFL05-12-L08 - full reading 
TGGGATCTCA AAACCCTAAT ATCTGAACTT CGCCGTCGAG AGCATCCATG 
GGTCGTGTCA TCAGAGCTCA ACGTAAGGGT GCGGGTTCCG TCTTCAAATC 
CCACACTCAC CACCGCAAAG GTCCGGCTAA GTTCCGTAGC CTCGATTTCG 
GCGAGAGAAA TGGTTACCTC AAGGGCGTCG TGACGGAGAT CATCCACGAT 
CCTGGTCGTG GTGCTCCTCT TGCTCGTGTC ACTTTCCGTC ATCCTTTCCG 
TTTCAAGAAA CAAAAGGAGC TCTTCGTCGC CGCCGAAGGT ATGTACACCG 
GTCAGTTCTT GTACTGCGGT AAGAAAGCTA CTCTCGTCGT TGGAAATGTT 
CTCCCTCTTA GATCTATTCC TGAAGGAGCT GTTGTCTGCA ACGTCGAGCA 
TCACGTCGGT GATCGTGGTG TCCTCGCTAG AGCTTCTGGT GATTACGCCA 
TTGTTATCGC TCACAACCCT GACAGCGACA CTACTAGGAT TAAGTTGCCA 
TCGGGTTCGA AGAAGATTGT CCCAAGTGGA TGCAGGGCTA TGATTGGACA 
AGTTGCTGGA GGTGGAAGAA CTGAGAAGCC GATGCTCAAG GCAGGAAACG 
CGTACCACAA GTACCGTGTG AAGAGGAACT CATGGCCTAA GGTTCGTGGT 
GTGGCTATGA ATCCAGTGGA GCATCCTCAT GGAGGAGGTA ACCATCAGCA 
CATTGGTCAC GCCAGTACTG TTAGGCGTGA TGCACCTCCT GGACAGAAGG 
TTGGTCTTAT TGCTGCAAGG AGGACTGGTC GTCTCAGAGG TCAAGCTGCT 
GCTTCAGCTG CCAAGGCAGA CTAGAGTTAA AAGAGATAAA CTTTGTTTCT 
CTTGTTTTCT ATGTTTCAAG TTTTGTTGTC TGTGTTTCCT TTTGAACCTC 
ATTCTGAAAT CCTAAAAGAT TTTTATGATA AACCTTTCTC TCTT

Gene models with high sequence identity

  1. AT2G18020.1 [+] show detail - Ribosomal protein L2 family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther 60S RIBOSOMAL PROTEIN L8 6.3e-137
HMMPanther Ribosomal protein L2 6.3e-137
HMMPIR Ribosomal protein L2 3.1e-107
Gene3D Nucleic acid-binding, OB-fold 1.1e-16
Gene3D Ribosomal protein L2, domain 3 4e-34
HMMPfam Ribosomal protein L2 1.5e-41
HMMPfam Ribosomal protein L2 1.3e-16
PatternScan Ribosomal protein L2 0
superfamily Translation protein SH3-like 3.9e-54
superfamily Nucleic acid-binding, OB-fold-like 2.8e-22

See the detailed result >

AT2G18020.1

Model type
Protein coding
Short Description
Ribosomal protein L2 family
Computational Description
embryo defective 2296 (EMB2296); FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: in 7 components; EXPRESSED IN: male gametophyte, guard cell, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein L2 (InterPro:IPR002171), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal protein L2, domain 3 (InterPro:IPR014726), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2, conserved site (InterPro:IPR022671); BEST Arabidopsis thaliana protein match is: Ribosomal protein L2 family (TAIR:AT4G36130.1); Has 10660 Blast hits to 10653 proteins in 3642 species: Archae - 317; Bacteria - 5675; Metazoa - 457; Fungi - 292; Plants - 1219; Viruses - 0; Other Eukaryotes - 2700 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-12-L08 introduced

  • F05451 - stem::coiled
  • F08036 - Specific phenotypes were NOT observed.
  • F10441 - Specific phenotypes were NOT observed.
  • F12826 - Specific phenotypes were NOT observed.
  • F21833 - Specific phenotypes were NOT observed.
  • F22747 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found