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  3. RAFL05-12-M22

RAFL05-12-M22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09325)

full reading [+] show sequence

Nucleotide sequence: RAFL05-12-M22 - full reading 
GTTTTCCCCC AAATTCTCAT AATTTTCACA AACAACCTCT CGTCTTCTAG 
GTTAATCCAA TTTCGTCGAT TCATGAAGTT CACAATTCTC CCATCGGAAA 
ATTCTTCGTA ATCGACGACG AAGAGATCAT GAGTACCGTC GGAGGTATAG 
AGCAGTTGAT ACCTGATTCC GTTTCAACGT CGTTCATCGA AACGGTGAAC 
GGTTCGCACC AGTTCACGAT TCAAGGTTAC TCTCTAGCCA AAGGCATGAG 
CCCTGGGAAG TTTATACAGA GCGATATCTT CTCCGTTGGT GGATACGATT 
GGGCGATTTA CTTCTATCCT GATGGGAAGA ACCCGGAGGA CCAGTCCTCG 
TATATCTCTT TGTTCATCGC TTTAGCGAGT GATTCTAATG ATATTAGGGC 
TTTGTTTGAG CTTACGCTTA TGGATCAGAG TGGGAAAGGG AAACATAAGG 
TGCATAGTCA CTTTGATCGG GCGCTTGAAG GTGGTCCTTA TACACTTAAG 
TATAAAGGAA GCATGTGGGG TTACAAACGC TTTTTCAAAC GATCAGCTTT 
AGAAACCTCT GACTACTTAA AGGATGATTG TCTTGTCATC AATTGTACTG 
TTGGCGTTGT TAGAGCCCGA CTCGAGGGTC CAAAACAGTA TGGCATTGTG 
CTACCCCTGT CGAATATGGG TCAGGGATTG AAAGACTTGT TAGATTCTGA 
AGTTGGTTGT GACATAGCTT TCCAAGTCGG AGATGAAACA TACAAAGCTC 
ACAAACTGAT TCTCGCGGCA CGCTCCCCAG TTTTTAGAGC TCAGTTTTTT 
GGACCAATTG GGAATAACAA TGTGGATAGA ATAGTGATAG ACGACATCGA 
ACCTTCTATC TTCAAGGCTA TGCTTAGCTT CATTTACACC GATGTACTTC 
CTAATGTGCA TGAAATTACC GGGTCAACTT CTGCCAGTTC GTTTACAAAC 
ATGATACAAC ATCTCTTGGC AGCTGCTGAC CTCTATGACC TTGCAAGGTT 
AAAGATATTA TGTGAAGTTT TGCTATGCGA AAAACTTGAT GTTGATAATG 
TGGCAACAAC ACTTGCGTTG GCTGAACAGC ACCAATTCTT ACAGCTCAAA 
GCGTTCTGCT TAGAATTTGT TGCATCTCCA GCAAACTTGG GAGCTGTAAT 
GAAGTCCGAA GGGTTCAAGC ACTTGAAACA GAGCTGTCCC ACTTTGTTAT 
CTGAGTTGCT GAACACTGTT GCAGCAGCAG ATAAGAGCTC GACGAGTGGA 
CAATCAAACA AGAAAAGAAG TGCGAGCAGT GTATTAGGGT GTGACACTAC 
AAATGTGAGG CAATTGAGGA GGAGAACACG AAAAGAAGTG CGAGCAGTGT 
CTTAGGATCA TTACATACCG TATGCAAAAT TCTAGAATTA TGCATTGTGT 
TTCAAGCAGA GTTTATGAAT TCCAAGTCAT CCCGTGAACT TTTTTACCAG 
TGAGAATTAT AGAGGCCTGA ACTCTGAAC

Gene models with high sequence identity

  1. AT2G39760.1 [+] show detail - BTB/POZ/MATH-domains containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart MATH 0.000000000000024
HMMSmart BTB/POZ-like 3e-26
HMMPfam BTB/POZ 1.2e-31
HMMPfam MATH 0.000000023
Gene3D TRAF-type 0.0000000025
Gene3D BTB/POZ fold 1.1e-24
ProfileScan BTB/POZ-like 18.017
ProfileScan MATH 25.096
superfamily TRAF-like 4e-39
superfamily BTB/POZ fold 1.3e-28
HMMPanther BTB-RELATED 1.6e-84
HMMPanther Kelch related 1.6e-84

See the detailed result >

AT2G39760.1

Model type
Protein coding
Short Description
BTB/POZ/MATH-domains containing protein
Computational Description
BPM3; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 1 (TAIR:AT5G19000.1); Has 6744 Blast hits to 6554 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 4817; Fungi - 136; Plants - 1477; Viruses - 34; Other Eukaryotes - 280 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-12-M22 introduced

  • F07227 - rosette leaf::variegated / stem::abnormal
  • F18121 - Specific phenotypes were NOT observed.
  • F28128 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found