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RAFL05-12-O10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87472)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-12-O10 - 5 prime EST 
GTAGTCTGAG TCTGAACCCT AAAACATCCC GCTTCGCTGC TCAGGACCAA 
GAATCTCAGA TTCAACTGAT CTTTGCAACA TGACGAGGGT TTATGTCGGG 
AATTTGGACC CACGCGTCAC CGAAAGAGAA CTCGAAGACG AATTCAAGGC 
CTTCGGTGTT CTTCGCAATG TCTGGGTAGC TCGTAGACCT CCTGGCTACG 
CATTCCTCGA GTTCGATGAC GAAAGAGATG CTTTGGATGC AATCAGCGCA 
TTGGATCGAA AGAATGGGTG GCGTGTGGAG CTTTCTCATA AAGATAAAGG 
AGGTCGTGGA GGTGGTGGTG GTCGTCGTGG AGGTATTGAG GATTCCAAGT 
GCTATGAGTG TGGTGAGCTT GGACATTTTG CTCGCGAGTG TCGCCGTGGT 
CGAGGCTCTG TGAGGCGTAG AAGCCCTAGT CCCCGTCGTC GTAGGAGTCC 
AGATTATGGG TATGCTCGCA GGAGTATAAG CCCGCGTGGA AGAAGATCTC 
CTCCAAGGCG TCGCAGTGTT ACTCCACCTC GCCGTGGGAG GAGCTACAGC 
AGATCCCCTC CTTATCGTGG TTCACGCCGT GATTCTCCTC GCCGCAGAGA 
CTCGCCCTAT GGTCGACGTT CGCCATATGC CAATGGGGTG TGAAACTGGA 
CCCTGAAGAG AAAGAA

Gene models with high sequence identity

  1. AT1G23860.1 [+] show detail - RS-containing zinc finger protein 21
    E-value: 0; Score: 100.00

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-12-O10 - 3 prime EST 
GGGGTTCAAG GACGCTGTGT GAAGACAGCA GGCCAGTGCG TGTTATAGAG 
AATAAGTCAA GACGGCTGTT GGAAAACAGC ATGAAGGAGA ACTCACCAAA 
TCCAATTGTC TAATAAAACT CGAACATACC ATGACATGTC CATGCTCAAC 
AACCAAACCT AGAAGAGCTA ATACCATAAT AGCAGATATA AAGATCTATC 
CTAAAAGGCG CCACAGAGTA GATATAGCAT CATAGCTTAG TAATAGCTTC 
TTTCTCTTCA GGGTCCAGTT TCACACCCCA TTGGCATATG GCGAACGTCG 
ACCATAGGGC GAGTCTCTGC GGCGAGGAGA ATCACGGCGT GAACCACGAT 
AAGGAGGGGA TCTGCTGTAG CTCCTCCCAC GGCGAGGTGG AGTAACACTG 
CGACGCCTTG GAGGAGATCT TCTTCCACGC GGGCTTATAC TCCTGCGAGC 
ATACCCATAA TCTGGACTCC TACGACGACG GGGACTAGGG CTTCTACGCC 
TCACAGAGCC TCGACCACGG CGACACTCGC GAGCAAAATG TCCAAGCTCA 
CCACACTCAT AGCACTTGGA ATCCTCAATA CCTCCACGAC GACCACCACC 
ACCTCCACGA CCTCCTTTAT CTTTATGAGA AAGCTCCACA CGCCACCCAT 
TCTTTCGATC CAATGCGCTG ATTGCATCCA AAGCATCTCT TTCGTCATCG

Gene models with high sequence identity

  1. AT1G23860.2 [+] show detail - RS-containing zinc finger protein 21
    E-value: 0; Score: 100.00

AT1G23860.1

Model type
Protein coding
Short Description
RS-containing zinc finger protein 21
Curator Summary
Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.
Computational Description
RS-containing zinc finger protein 21 (RSZP21); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 6291 Blast hits to 5531 proteins in 385 species: Archae - 0; Bacteria - 201; Metazoa - 3437; Fungi - 488; Plants - 1566; Viruses - 48; Other Eukaryotes - 551 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G23860.2

Model type
Protein coding
Short Description
RS-containing zinc finger protein 21
Curator Summary
Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.
Computational Description
SRZ-21; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-12-O10 introduced

  • F03745 - seed::decreased size / seed::decreased length

Mutant lines with disrupted or induced

4 mutant lines found