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RAFL05-12-O15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87473)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL05-12-O15 - 5 prime EST 
GATATCTCTC CTTCCTACTT CCTCGGTTTC ATCGTCCACT GTCTCAACAA 
TGGCGTCATT GTCAGGTACC TTGCGTCAAG ATCTGTGCTC TGAACAGGCG 
GGTCGGATCT CTCCCTGGAA TCTCTACTCA AAGATGGCAG CCGCAACCCA 
ATGGGATCTC CTTTCCCTCC GATGTTTCTC AGAATCATTC TGCATTCTGG 
AGGTTGCGTG CAACAACTAA TGAGGTTGTT TCTAACTCCA CTCCAATGAC 
TAATGGTGGG TATATGAACG GAAAAGCGAA AACCAATGTT CCTGAACCCG 
CCNAGCTCTC TGAATTTATG GCTAAAGTCT CTGGTCTTCT TAAGCTTGCG 
GATTCAAAAG ACATAGTGGA ACTTGAACTA AAGCAGCTCG ACTGTGANAT 
CGTTATTCGA AAGAAGGAAG CTTTACAGCA AGCTGTACCA CCAGCTCCAG 
TTTATNACTC AATGCCTCCT GTAATGGCAG ACTTTTTCAA TGCCCT

Gene models with high sequence identity

  1. AT5G15530.1 [+] show detail - biotin carboxyl carrier protein 2
    E-value: 0; Score: 98.97

3 prime EST [+] show sequence

Nucleotide sequence: RAFL05-12-O15 - 3 prime EST 
GCGAGGCTAC AAAATACATT AGTTTCGCAG AAAACTAAAA AGCAAAGTGT 
AGTACGTTAC GTGAAATCCC AAAAGATGGG TCAATTATTG AAGCGACAAG 
CAGAAATCCG AAACCAACCA ACTTAAGCTG AAATAATTAC TTGATGAGTT 
TTAGCACGTT GCTATAGCTT AACCGAGACT TTGAAGATGT TTTGAAGCAG 
CTAAAAGGAT CCTTCTTCGT TTCAAGGTGC GATGACAAAA AGAGGCGTGT 
CAACGCTGAC TGGTTTTCCA TCTTCAGCCA GTAGTTCCAT GATGGTTCCT 
GACTTCTCAG CCTCAATCTC GTTCATCAGT TTCATAGCTT CGATAATACA 
AACAATT

Gene models with high sequence identity

  1. AT5G15530.1 [+] show detail - biotin carboxyl carrier protein 2
    E-value: 0; Score: 100.00

AT5G15530.1

Model type
Protein coding
Short Description
biotin carboxyl carrier protein 2
Curator Summary
biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA,
Computational Description
biotin carboxyl carrier protein 2 (BCCP2); FUNCTIONS IN: biotin binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin-binding site (InterPro:IPR001882), Single hybrid motif (InterPro:IPR011053), Acetyl-CoA biotin carboxyl carrier (InterPro:IPR001249), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: chloroplastic acetylcoenzyme A carboxylase 1 (TAIR:AT5G16390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-12-O15 introduced

  • F01841 - seed::decreased size

Mutant lines with disrupted or induced

3 mutant lines found