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  3. RAFL05-12-O17

RAFL05-12-O17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07288)

full reading [+] show sequence

Nucleotide sequence: RAFL05-12-O17 - full reading 
AACTCCGGCA CGAGTCTCGT TCTCTTCTCT TTACCGCCGT CATCTAGGTC 
TGCTAATATC AAGTGAAGGA GCTCGAAATG GCCACAGTTC CAGGACAGTT 
GATCTGGGAG ATCGTGAAGA GAAACAACTG TTTCTTGGTG AAGCAATTCG 
GTAGAGGTAA TGCCAAGGTT CAGTTCAGCA AAGAGAGCAA CAACCTCGTC 
AACATCAACT CGTACAAGCA CTCTGGTTTG GCCAACAAAA AGACAGTGAC 
CATTCAGGCG GCTGGCAAGG ACCAAGGTGT TGTACTCGGA ACCACCAAGA 
CTAAGAGACA AAACAAGCCT AAGCTCTCTG TTAACAAGTC TATCCTCAAG 
AAGGAGTTCT CGAGGATGAG TAAAGTTGTT GCCAATCAGG TAGTGGACAA 
CTACTACAGG CCTGATTTGA AGAAAGCAGC ACTTGCTAGG CTTAGCGCTA 
TCAGCAAAGG TCTTAGAGTA GCCAAGTCGG GTCCCAAGAG GAGAAACAGA 
CAGGCTTGAA GAATCCACTA CTGAATATCT TGTTTACTTT TTCTAAAAAG 
CTTGTTGTGA GCCATTAAGA GTTTCTGACA GCAGCTTGTA GGTTAAGATT 
TTTCCTGAAC AGCTCAAGGA TTGTACCACC ATCCTTTTTT CACTAAATGA 
TATTAAAACT

Gene models with high sequence identity

  1. AT4G29410.1 [+] show detail - Ribosomal L28e protein family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Ribosomal protein L28e 3.4e-50
HMMPanther Ribosomal protein L28e 8.5e-52

See the detailed result >

AT4G29410.1

Model type
Protein coding
Short Description
Ribosomal L28e protein family
Computational Description
Ribosomal L28e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: Ribosomal L28e protein family (TAIR:AT2G19730.3); Has 531 Blast hits to 531 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 284; Fungi - 94; Plants - 107; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-12-O17 introduced

  • F03724 - Specific phenotypes were NOT observed.
  • F10325 - Specific phenotypes were NOT observed.
  • F10729 - rosette leaf::decreased size / rosette leaf::increased width / stem::decreased thickness / cauline leaf::epinastic / sporophyte vegetative stage::decreased speed
  • F20245 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found