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  3. RAFL05-12-P23

RAFL05-12-P23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02555)

full reading [+] show sequence

Nucleotide sequence: RAFL05-12-P23 - full reading 
GCCTCTTCGT GTGATTTACT GAGTGAAAAA AGCTTATCGC GGCGATTAGT 
TCCCGGCGAA GAAGAAGAAG AGAGATAAGA AAATGGCGAC TAATGGATCT 
GCTAGCTCAG CGCAGCTCTC TCAGAAGGAA GCTGATGTCA GGATGATGTG 
TGCCGCTGAG GTTCATCTTG GAACCAAGAA TTGCAATTAC CAGATGGAGC 
GTTACGTCTT CAAGAGACGC AACGATGGTA TTTACATCTT CAACCTTGGC 
AAAACATGGG AAAAGCTCCA GATGGCTGCT AGAGTTATTG TTGCCATTGA 
GAACCCACAG GACATCATCG TCCAGTCAGC TAGGCCCTAT GGACAGAGAG 
CTGTGTTGAA GTTTGCTCAG TACACTGGAG CCAATGCCAT TGCTGGAAGA 
CACACTCCTG GTACCTTCAC CAATCAGATG CAGACATCCT TCAGTGAACC 
AAGGCTGTTG ATTCTTACTG ACCCAAGAAC TGACCACCAG CCTATCAAGG 
AAGGTGCTTT GGGAAACATT CCAATCATTG CTTTCTGTGA CACAGACTCT 
CCAATGAGAT TTGTTGACAT TGGTATCCCA GCCAACAACA AGGGAAAGCA 
CAGCATTGGG TGCCTTTTCT GGCTTCTGGC TCGCATGGTC CTTCAGATGC 
GTGGAACCAT TGCTGCTGGA CAGAAGTGGG ATGTCATGGT TGACCTGTTC 
TTTTACAGGG AACCTGAGGA GACTAAGCCA GAGGATGAAG ATGAAGCTGG 
CCCTCAGGCA GAATATGGTG CACTTCCTGC TCCAGAATAT GGAATGGTAG 
GTGGAGACCA ATGGACCACC GCTCAGATCC CTGATGCTGC ATGGCCAGGA 
GAAGGTCAGG CACCAATCTC TGCTGCACCT GCTGCTGCTT CTTGGAGTGA 
TTCCGCTGCT GCACCGGCAG ATGGTGGATG GGAAGCTGCC GCGCCACCCT 
CAGGGGCACC AGCTGCTGGT TGGGAGTAAA GTTGATAGCC TTTACTCAAT 
GGTTTAATGG TTATAGACAT GCTTTTTTGT TACTTTTGGG ATTGAAGAGT 
TATCGAACCG TAACTGTTTT TTCTTCTCAC TTGTTTCTCT TAAGACCCTT 
AGATGTTTTG CACCTTTTTG TTTGAATCGA ATCTATATTT TGCGTTTATC 
G

Gene models with high sequence identity

  1. AT1G72370.1 [+] show detail - 40s ribosomal protein SA
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther 40S RIBOSOMAL PROTEIN SA (P40) 9.9e-199
HMMPanther Ribosomal protein S2, eukaryotic/archaeal 9.9e-199
HMMTigr Ribosomal protein S2, eukaryotic/archaeal 1.3e-151
FPrintScan Ribosomal protein S2 2.1e-29
FPrintScan Ribosomal protein S2 2.1e-29
FPrintScan Ribosomal protein S2 2.1e-29
FPrintScan Ribosomal protein S2 2.1e-29
FPrintScan Ribosomal protein S2 2.1e-29
FPrintScan Ribosomal protein S2 2.1e-29
HMMPfam Ribosomal protein S2 8e-22
HMMPfam Ribosomal protein S2 5.6e-19
superfamily Ribosomal protein S2 2.9e-69
PatternScan Ribosomal protein S2, conserved site 0
PatternScan Ribosomal protein S2, conserved site 0

See the detailed result >

AT1G72370.1

Model type
Protein coding
Short Description
40s ribosomal protein SA
Curator Summary
acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.
Computational Description
40s ribosomal protein SA (P40); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, mature ribosome assembly, translation, response to osmotic stress; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA B (TAIR:AT3G04770.2); Has 3789 Blast hits to 3785 proteins in 1365 species: Archae - 262; Bacteria - 1853; Metazoa - 688; Fungi - 331; Plants - 191; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-12-P23 introduced

  • F09539 - Specific phenotypes were NOT observed.
  • F14902 - Specific phenotypes were NOT observed.
  • F18315 - Specific phenotypes were NOT observed.
  • F25123 - Specific phenotypes were NOT observed.
  • F27324 - Specific phenotypes were NOT observed.
  • F28206 - Specific phenotypes were NOT observed.
  • F29235 - rosette leaf::increased size / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / stem::decreased thickness / whole plant::decreased height

Mutant lines with disrupted or induced

19 mutant lines found