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  3. RAFL05-13-A10

RAFL05-13-A10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02557)

full reading [+] show sequence

Nucleotide sequence: RAFL05-13-A10 - full reading 
ACTCTCTCAC ACTCGTTGAC CAAAAAAAAA ACTCTCTCTT TCACTGAGAA 
ATGCTCTGCT TCACTCATGT CCCACCTCTT CCTCTGTTCT CCACCTCCGG 
TATCTATCTT CCGGCCTCCA GACGATTCAC TAGTTTCAGG ATTAGAATGT 
CTTCTTCTTC CTCCATCGAT TCTGTTCCTC CTCCACCGGA TAACGCAATC 
GTCCTTGGTT GTGGTGGAAT CGCTGTAGAT TTCTTAGCGA CGGTGGATTC 
TTATCCTCAA GCTGACGACA AGATCCGAAG CACTAGCCTA AAGGTGCAAG 
GAGGTGGAAA TGCTGCAAAT GCGTTAACTT GTGCTGCTCG TTTGGGATTG 
AATTCGAGAC TGATTAGTAA GGTAGCGAAT GACTCTCAAG GAAAAGGCAT 
GTTGGAGGAG CTTGAAGCTG ATGGTGTGGA TACTTCTTTT ATTGTGGTCT 
CTAAAGAGGG TAATTCACCA TTTACCTATA TCTTAGTTGA CAACCAAACG 
AAAACGCGTA CTTGTATTCA CACGCCTGGA GACCCACCTA TGTTACCAAC 
TGACCTTTCT CAATCGAGTA TGCTATCAGC GCTAGACCGA GCCAGCATTG 
TATACTTTGA TGTAAGATTA CACGAAACAG CTTTGGTTAT TGCAAAAGAG 
GCAAGTCGCA AGAAGATACC TATTTTAGTT GATACAGAGA AAAAAAGAGA 
TGGTTTAGAT GATCTCTTGC CATTCGCCGA CTACGTTGTC TGTCCAGAAA 
ATTTCCCTCA GACATGGACA GAAGTGTCTT CAACTCCTGG TGCACTTGTT 
TCCATGTTGT TGAGATTGCC TAAACTGAAA TTTGTGATCG TGACCTCAGG 
TGAACATGGG TGCTTAATGG TTCAAAGAGC TTCAAAAGCA GAAGTATTTG 
AATCTCAAGA GACAGACATT GAAAGCTTGT TGGAGACACT GAAGCATAGA 
AAAGACTCAA CGACAACATT TCCAACATGT GTTTCATCGG AGACAACAAA 
GCTGAAGGCC AACGGGGTAG GAACAATGAC CGGAAGATTG TTTCTCGGAA 
CAGCGGAGAA AATTCCTCCA GAAGAGCTTG TAGACACCAC TGGTGCTGGC 
GATGCATTCA TAGGAGCTGT TCTATATGCC ATATGCGCCG GCATGCCCCC 
AGAGAAAATG TTACCATTTG CTGCTCAAGT GGCTGGTTGC AGCTGCCGGG 
CTTTGGGAGC TCGCACGGGT CTTCCTCACC GTACAGATCC TAGACTTGTA 
CCCTTTCTGG TTTGACACTC TCTGTGTTCC TTTGTCAACC TTTCTGAGTC 
ACTACTTTAC TCCATTGCCC ACTTTCATAT ATTTTGAATG TTCTTCTACT 
TATTAGATGA AATAAAAGAC ATGGTGGTAT GCAT

Gene models with high sequence identity

  1. AT4G28706.2 [+] show detail - pfkB-like carbohydrate kinase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 3.3e-53
FPrintScan Ribokinase 1.3e-06
FPrintScan Ribokinase 1.3e-06
FPrintScan Ribokinase 1.3e-06
superfamily Ribokinase-like 1.4e-64
PatternScan Carbohydrate/puine kinase, PfkB, conserved site 0
HMMPanther UNCHARACTERIZED 5.6e-227
HMMPanther SUGAR KINASE RELATED 5.6e-227
HMMPfam Carbohydrate/purine kinase 5.5e-40

See the detailed result >

AT4G28706.2

Model type
Protein coding
Short Description
pfkB-like carbohydrate kinase family protein
Computational Description
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT5G43910.2); Has 7438 Blast hits to 7159 proteins in 1790 species: Archae - 225; Bacteria - 5592; Metazoa - 327; Fungi - 119; Plants - 278; Viruses - 0; Other Eukaryotes - 897 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-13-A10 introduced

  • F12514 - Specific phenotypes were NOT observed.
  • F13637 - rosette leaf::present in greater numbers in organism / whole plant flowering stage::late / root::present in greater numbers in organism
  • F24847 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found