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RAFL05-13-A10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02557)

full reading [+] show sequence

Nucleotide sequence: RAFL05-13-A10 - full reading
ACTCTCTCAC ACTCGTTGAC CAAAAAAAAA ACTCTCTCTT TCACTGAGAA 
ATGCTCTGCT TCACTCATGT CCCACCTCTT CCTCTGTTCT CCACCTCCGG
TATCTATCTT CCGGCCTCCA GACGATTCAC TAGTTTCAGG ATTAGAATGT
CTTCTTCTTC CTCCATCGAT TCTGTTCCTC CTCCACCGGA TAACGCAATC
GTCCTTGGTT GTGGTGGAAT CGCTGTAGAT TTCTTAGCGA CGGTGGATTC
TTATCCTCAA GCTGACGACA AGATCCGAAG CACTAGCCTA AAGGTGCAAG
GAGGTGGAAA TGCTGCAAAT GCGTTAACTT GTGCTGCTCG TTTGGGATTG
AATTCGAGAC TGATTAGTAA GGTAGCGAAT GACTCTCAAG GAAAAGGCAT
GTTGGAGGAG CTTGAAGCTG ATGGTGTGGA TACTTCTTTT ATTGTGGTCT
CTAAAGAGGG TAATTCACCA TTTACCTATA TCTTAGTTGA CAACCAAACG
AAAACGCGTA CTTGTATTCA CACGCCTGGA GACCCACCTA TGTTACCAAC
TGACCTTTCT CAATCGAGTA TGCTATCAGC GCTAGACCGA GCCAGCATTG
TATACTTTGA TGTAAGATTA CACGAAACAG CTTTGGTTAT TGCAAAAGAG
GCAAGTCGCA AGAAGATACC TATTTTAGTT GATACAGAGA AAAAAAGAGA
TGGTTTAGAT GATCTCTTGC CATTCGCCGA CTACGTTGTC TGTCCAGAAA
ATTTCCCTCA GACATGGACA GAAGTGTCTT CAACTCCTGG TGCACTTGTT
TCCATGTTGT TGAGATTGCC TAAACTGAAA TTTGTGATCG TGACCTCAGG
TGAACATGGG TGCTTAATGG TTCAAAGAGC TTCAAAAGCA GAAGTATTTG
AATCTCAAGA GACAGACATT GAAAGCTTGT TGGAGACACT GAAGCATAGA
AAAGACTCAA CGACAACATT TCCAACATGT GTTTCATCGG AGACAACAAA
GCTGAAGGCC AACGGGGTAG GAACAATGAC CGGAAGATTG TTTCTCGGAA
CAGCGGAGAA AATTCCTCCA GAAGAGCTTG TAGACACCAC TGGTGCTGGC
GATGCATTCA TAGGAGCTGT TCTATATGCC ATATGCGCCG GCATGCCCCC
AGAGAAAATG TTACCATTTG CTGCTCAAGT GGCTGGTTGC AGCTGCCGGG
CTTTGGGAGC TCGCACGGGT CTTCCTCACC GTACAGATCC TAGACTTGTA
CCCTTTCTGG TTTGACACTC TCTGTGTTCC TTTGTCAACC TTTCTGAGTC
ACTACTTTAC TCCATTGCCC ACTTTCATAT ATTTTGAATG TTCTTCTACT
TATTAGATGA AATAAAAGAC ATGGTGGTAT GCAT

Gene models with high sequence identity

  1. AT4G28706.2 [+] show detail - pfkB-like carbohydrate kinase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 3.3e-53
FPrintScan Ribokinase 0.0000013
FPrintScan Ribokinase 0.0000013
FPrintScan Ribokinase 0.0000013
superfamily Ribokinase-like 1.4e-64
PatternScan Carbohydrate/puine kinase, PfkB, conserved site 0
HMMPanther UNCHARACTERIZED 5.6e-227
HMMPanther SUGAR KINASE RELATED 5.6e-227
HMMPfam Carbohydrate/purine kinase 5.5e-40

See the detailed result >

AT4G28706.2

Model type
Protein coding
Short Description
pfkB-like carbohydrate kinase family protein
Computational Description
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT5G43910.2); Has 7438 Blast hits to 7159 proteins in 1790 species: Archae - 225; Bacteria - 5592; Metazoa - 327; Fungi - 119; Plants - 278; Viruses - 0; Other Eukaryotes - 897 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-13-A10 introduced

  • F12514 - Specific phenotypes were NOT observed.
  • F13637 - rosette leaf::present in greater numbers in organism / whole plant flowering stage::late / root::present in greater numbers in organism
  • F24847 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found