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RAFL05-13-B02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02559)

full reading [+] show sequence

Nucleotide sequence: RAFL05-13-B02 - full reading 
GATCGACAAA TAGGGTTTAG AATCCACACA CCCAAATCGG AAGGCGAAGA 
AAATGGAAGG ATGGGATCCG AACACGAAGT CGACGTTAAC GCGAATACCG 
CTTCTGACGA CAAAGGCGGG TCCAAGAGAC GGCGCGGCAT GGACGCAGAG 
GCTGAAAGAG GAGTACAAGT CTCTGATTGC GTATACCCAA ATGAACAAGT 
CCAACGACAA TGACTGGTTC CGTATCTCCG CTTCCAATCC TGAGGGCACG 
CGTTGGACTG GCAAGTGTTG GTATGTTCAC AACCTTCTCA AATACGAATT 
CGATCTCCAG TTCGATATCC CGATTACCTA TCCAGCCACT GCTCCTGAGC 
TTGAGCTGCC TGAGATTGAC GGCAAGACTC AAAAGATGTA TCGAGGTGGG 
AAGATATGTT TGACTGTGCA TTTCAAGCCT CTATGGGCCA AAAACTGTCC 
TCGGTTTGGT ATAGCACATG CACTTTGTTT GGGGCTCGCT CCGTGGTTAG 
CTGCAGAGAT TCCAATTCTT GTGGACTCCG GCGCGATTAA GCACAAAGAT 
GACGCAGCCA CATCTGCGGA ATCTTAAATC TATGTAACCT TTCTATCAAT 
CTCAGAAATG TTGAGGTGTT TATCAGTAAT AGCTGAACTC AGAAATGACT 
GAGGTGGATG CGTCTACCCT ATAAATACAC TTACATGAAA CCCAATAAAG 
ATTTAAGCTA TTGCAATGTT TTT

Gene models with high sequence identity

  1. AT1G27530.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPIR Ubiquitin-fold modifier-conjugating enzyme 1 4.8e-126
HMMPanther Ubiquitin-fold modifier-conjugating enzyme 1 8.5e-139
HMMPfam Ubiquitin-fold modifier-conjugating enzyme 1 9e-88
superfamily Ubiquitin-conjugating enzyme/RWD-like 6e-08

See the detailed result >

AT1G27530.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-13-B02 introduced

  • F05547 - rosette leaf::dark green / rosette leaf::epinastic / rosette leaf::present in greater numbers in organism / stem::dark green / sporophyte vegetative stage::decreased speed / root::present in greater numbers in organism
  • F09938 - Specific phenotypes were NOT observed.
  • F11312 - Specific phenotypes were NOT observed.
  • F20819 - Specific phenotypes were NOT observed.
  • F25837 - Specific phenotypes were NOT observed.
  • F27007 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found