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RAFL05-13-B03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09328)

full reading [+] show sequence

Nucleotide sequence: RAFL05-13-B03 - full reading 
AAAAAAAAAA AAGCATTTAC ACAACGAAGA TCATTAATGG CTCTCGAGGC 
ATGGTTTATG GATGATAGCA ATGAGGACCA GAGACTTCCT CATCATCGTA 
ACCCGAAAGA ACTCGTCTCG TTGGATTACT TGGCAGAGTT GGGAGTGTTG 
TACTGGAAGT TGAACCCTGA GAACTACGAG AATGATTCTG AACTTAGCAA 
GATTAGAGAA GACAGGGGTT ACGATTACAT GGATTTGCTG GATCTGTGTC 
CCGAGAAAGT CAGCAACTAC GAAGAAAAGC TGAAGAACTT TTTCACAGAA 
CACATTCACA AGGACGAAGA GATTCGGTAC TGCCTAGCAG GAAGTGGCTA 
CTTTGATGTT AGGGACAAGG ATGATCGTTG GATCCGTATC TGGATGCAAC 
CTGGCGATCT CATTGTCCTT CCTGCCGGAA TCTACCACCG GTTCACACTC 
GACGCCAGCA ACTACATCAA GCTAATGAGG CTGTTCGTGG GGGAACCGGT 
TTGGACACCA TATAACCGGC CACAGGAAGA ACATCCTGTT AGGAAAAAGT 
ATATCCACGG CTTAACCTAC AAGTTTGGAG AAACCGTTAA AGCACATTAA 
CAATATTAAT ATATGCTTGT TGTGTAATTT GTATGTATTG TTTACTCTTT 
AGTCTTAAGC AGTAAAATAA AAACAGCGGC TCCTTCTGGA TAGTTGTTCT 
TGTAACATAC TTTTGCGATG TATGCTTTTA TACATAAAAA AAATAGTGTG 
TATTTATC

Gene models with high sequence identity

  1. AT5G43850.1 [+] show detail - RmlC-like cupins superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Acireductone dioxygenase, ARD 5.6e-63
Gene3D RmlC-like jelly roll fold 4.1e-73
superfamily Cupin, RmlC-type 5.9e-47
HMMPanther Acireductone dioxygenase, ARD 4.4e-91

See the detailed result >

AT5G43850.1

Model type
Protein coding
Short Description
RmlC-like cupins superfamily protein
Computational Description
ARD4; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: L-methionine salvage from methylthioadenosine, oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acireductone dioxygenase, ARD (InterPro:IPR004313), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT4G14710.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-13-B03 introduced

  • F13313 - Specific phenotypes were NOT observed.
  • F17422 - Specific phenotypes were NOT observed.
  • F17825 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found