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  3. RAFL05-13-B05

RAFL05-13-B05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03017)

full reading [+] show sequence

Nucleotide sequence: RAFL05-13-B05 - full reading 
CTCGATTGGT ATCTCTCGCT CCGTCCTTCC TCAGATCTGA TCGTCCGCCG 
GTTTTCACGA TGCCGTCTTC CTCCTCCGCC GCCGTCCTCG TGTTCCTTCT 
TCTCGTTTCC CTTCTCACTC CTACGTTCGC ATCCGATTCA GATCACAAGT 
ATCAAGCCGA GGAGCAGGTC ACCCTATGGG TAAACAAAGT TGGCCCATAT 
AACAATCCAC AAGAAACATA CAACTATTAC AGTCTTCCAT TTTGCCGCCC 
ATCTGGAAAC AATGTTCACA AATGGGGTGG TCTTGGTGAA GTTCTAGGTG 
GAAATGAGCT GATTGACAGT GAGATTGCGA TAAAATTCAT GAAGAATGTC 
GAGAGAAGTG TCATCTGTCC GCTTGAACTC GATGAAGCTA AGGTCAAGCA 
TTTTAAAGAT GCCATTGAAT CTAGCTACTG GTTCGAATTT TTTATGGATG 
ATCTACCTTT GTGGGGCTTT GTGGGTGAGC TGCATCCTGA CAAAAATAGT 
GAAAACGGCA AGCATGTTCT TTACACACAT AAGAACATTG TTGTCAAATA 
CAACAAAGAC CAGATCATTC ATGTTAATCT CACTCAAGAC AACCCAAGGC 
CATTGGAAGC AGGGAAAAAA ATGGACCTGA CGTATTCTGT GCAATGGATT 
CCAACAAATG TCACATTTGC TCGCCGCTTT GACGTATATC TGGATTATCC 
GTTCTTTGAA CACCAGATCC ACTGGTTCTC CATCTTTAAC TCGTTCATGA 
TGGTTATTTT CCTCACCGGT TTGGTCTCAA TGATATTGAT GAGGACTCTC 
AGAAATGATT ATGCGAAGTA TGCTAGAGAA GATGATGATC TTGAGAGCTT 
GGAACGGGAT GTAAGTGAAG AATCTGGTTG GAAACTTGTG CATGGAGATG 
TGTTCAGGCC AGCAAGTAGT CTAGTTCTGC TCTCAGCGGT AGTTGGTACA 
GGTGCACAGT TGGCGTTGCT GGTTCTTCTT GTCATATTAA TGGCCATCGT 
GGGAACTCTC TACGTTGGGA GAGGAGCAAT CGTCACAACT TTCATAGTGT 
GCTATGCTCT GACTTCTTTT GTCTCTGGTT ATGTGAGCGG TGGAATGTAC 
TCAAGAAGCG GGGGTAAACA TTGGATCAAG TGCATGGTCC TCACGGCTTC 
TCTCTTCCCC TTTTTGTGCT TCGGAATTGG CTTTCTCCTA AACACAATTG 
CCATATTCTA TGGATCTCTT GCGGCTATTC CTTTTGGGAC AATGGTGGTT 
GTGTTTGTAA TTTGGGGGTT CATTTCCTTC CCCTTAGCCC TCCTCGGAAC 
GGTTGTTGGA AGAAATTGGA GCGGTGCTCC TAACAATCCA TGCCGTGTGA 
AGACTATTCC ACGTCCAATC CCTGAGAAAA AATGGTACTT GACTCCATCA 
GTCGTCTCCC TGATGGGGGG TTTGCTACCC TTTGGAAGCA TCTTCATTGA 
GATGTACTTT GTCTTCACAT CCTTCTGGAA TTACAAGGTC TACTATGTGT 
ATGGATTCAT GTTACTGGTT TTTGTGATTC TCGTCATAGT GACGGTGTGT 
GTGACAATCG TGGGTACATA TTTCCTGCTG AATGCAGAGA ACTATCACTG 
GCAGTGGACT TCATTTTTCT CTGCTGCTTC GACGGCTGTC TATGTGTACT 
TATACTCCAT CTATTACTAC TACGTAAAGA CCAAGATGTC CGGATTCTTC 
CAGACAAGCT TCTACTTTGG ATACACCATG ATGTTCTGTC TTGGCCTTGG 
AATCCTTTGC GGAGCTGTTG GCTACCTGGG ATCAAATCTG TTTGTAAGGA 
GGATCTACAG AAACATCAAG TGCGACTAGA AGAGGTAAAC GGAAAAAAAG 
AGAAAACAAA TCCAATTAGA AGGAAGCTCT TACGAGGTTA TATATTATAT 
TGAAGGAACA TAATATATTC TTCAATGGGG GCTTTTTGTC TCTTCATCTT 
CTTCTTTTTT TTTTTTTTTT TTTTCTTCCC ATTTTGGTAA GTGAATTGTT 
CTCTTTAGAT TAGAATCGAG TGGGTGTACT ATACTACTAC TACCTGTAAA 
TTTTTCCCTA TC

Gene models with high sequence identity

  1. AT1G10950.1 [+] show detail - transmembrane nine 1
    E-value: 0; Score: 99.85

 

InterPro Scan Digest

Program Description E-value
HMMPanther ENDOMEMBRANE PROTEIN EMP70 0
HMMPanther Nonaspanin (TM9SF) 0
HMMPfam Nonaspanin (TM9SF) 2.8e-187

See the detailed result >

AT1G10950.1

Model type
Protein coding
Short Description
transmembrane nine 1
Curator Summary
Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.
Computational Description
transmembrane nine 1 (TMN1); LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1611 Blast hits to 1538 proteins in 326 species: Archae - 0; Bacteria - 16; Metazoa - 610; Fungi - 273; Plants - 454; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-13-B05 introduced

  • F08514 - Specific phenotypes were NOT observed.
  • F18002 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / sporophyte vegetative stage::decreased speed / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::abnormal / cauline leaf::decreased size / stem::present in fewer numbers in organism
  • F29407 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found