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  3. RAFL05-13-D04

RAFL05-13-D04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02562)

full reading [+] show sequence

Nucleotide sequence: RAFL05-13-D04 - full reading 
GTAAAACTTA CATAATGGGA ATGGTTTTTG GTAAAATCGC TGTAGAGACT 
CCTAAATACA CGGTGACTAA ATCCGGTGAC GGTTATGAGA TCCGTGAATA 
TCCACCAGCG GTTGCGGCGG AGGTTACATA CGATGCGTCG GAGTTCAAAG 
GTGATAAAGA CGGAGGCTTT CAGCTTTTGG CTAAGTACAT AGGTGTGTTT 
GGCAAACCGG AGAATGAGAA ACCGGAGAAA ATTGCTATGA CTGCACCGGT 
GATCACTAAG GAAGGTGAGA AGATTGCGAT GACTGCTCCG GTGATTACTA 
AGGAGAGTGA GAAGATTGAG ATGACTTCTC CGGTTGTAAC TAAGGAAGGT 
GGTGGAGAAG GAAGGAAGAA GTTGGTGACG ATGCAGTTTT TGTTGCCGTC 
GATGTATAAG AAGGCGGAGG AGGCACCACG TCCAACGGAT GAGAGGGTTG 
TGATTAAGGA GGAAGGAGGG AGGAAGTATG GTGTGATTAA GTTTAGTGGT 
ATAGCGTCGG AGAGTGTGGT GAGTGAGAAG GTGAAGAAGC TGAGTAGTCA 
TCTTGAGAAA GATGGGTTTA AGATCACCGG AGATTTCGTT CTTGCTAGGT 
ATAATCCTCC ATGGACGTTA CCACCGTTTA GGACCAATGA GGTCATGATT 
CCTGTTGAAT GAATTTGATT CAAAGTTTCC TGCTTTTGGT TTCAAAGAAC 
TTGTTTTTAT TTTGTTTCAC TGTGTTTGTA GTTGTAAGAA GCATAACAAT 
AATGTATACA AATCTGAGCT TTTGAAGTTA AATACTATAA AATGAATT

Gene models with high sequence identity

  1. AT2G37970.1 [+] show detail - SOUL heme-binding family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam SOUL haem-binding protein 1.2e-40
HMMPanther HEME-BINDING PROTEIN-RELATED 4.8e-82
HMMPanther SOUL haem-binding protein 4.8e-82

See the detailed result >

AT2G37970.1

Model type
Protein coding
Short Description
SOUL heme-binding family protein
Computational Description
SOUL-1; FUNCTIONS IN: binding; INVOLVED IN: N-terminal protein myristoylation, red or far-red light signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT3G10130.1); Has 1375 Blast hits to 1375 proteins in 156 species: Archae - 18; Bacteria - 186; Metazoa - 71; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 927 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-13-D04 introduced

  • F07531 - Specific phenotypes were NOT observed.
  • F19003 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found