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RAFL05-13-E03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09329)

full reading [+] show sequence

Nucleotide sequence: RAFL05-13-E03 - full reading 
AGTTCTTTTC TTCTCTCCTC CTCTTTCTTC TCCCTGATTG GAATTTTAGG 
GCTTTTGAAA GCACGAACGC GTGAAGCTCT AATCGAGAAA AAAATGGAGG 
TTTTGGATAG GAGAGACGAT GAGATCAGGG ACTCGGGAAA CATGGACAGC 
ATCAAGTCAC ACTATGTTAC CGACTCTGTT TCCGAGGAAC GCCGCTCTCG 
TGAGCTCAAG GATGGAGACC ATCCTTTACG GTACAAGTTT TCGATATGGT 
ACACTCGTCG CACACCAGGG GTTCGGAACC AGTCTTATGA AGATAACATC 
AAGAAGATGG TAGAATTCAG CACGGTTGAA GGATTTTGGG CCTGCTACTG 
TCACCTTGCT CGTTCTTCTC TCTTGCCTAG TCCAACAGAT CTTCATTTCT 
TTAAGGATGG GATTCGTCCA TTGTGGGAGG ATGGTGCCAA CTGCAATGGA 
GGAAAGTGGA TCATACGTTT CTCAAAAGTT GTATCTGCTC GCTTCTGGGA 
GGATCTGCTT CTTGCGTTGG TAGGCGACCA GCTTGATGAT GCTGATAACA 
TATGTGGGGC AGTACTGAGT GTCCGTTTCA ACGAGGACAT CATTAGTGTA 
TGGAATCGCA ATGCTTCTGA CCATCAGGCA GTGATGGGTT TGAGAGACTC 
AATCAAGCGG CATTTGAAGT TGCCTCATGC ATATGTCATG GAATACAAGC 
CACACGATGC TTCTCTCCGC GACAACTCTT CCTACAGAAA CACATGGCTG 
AGAGGATAGG CCCAAAGTCG ATGATTGTAT CATGTAATGT GGAGAAGATT 
TGGGAAGCTC ATCTGCAACC TGGGAAGATA TCTGGATTGA ACCCTGTATC 
CAATACCATA CTGTACCGGA GGCTTACAAT ATCAGAAAAA ACAAAATCCG 
GGCTACTTCT GTGTCAGTAT GTGTTCATTT CGTTTTTCTT TTACAGTACA 
TCTTGTTAAC TTCAATGGTT TGACTCTTGA TCAAAACTAT AAGGATGTAT 
TTTCAATGAA AACTGGAAAT TACGTTCTGG TTTACT

Gene models with high sequence identity

  1. AT5G18110.1 [+] show detail - novel cap-binding protein
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
HMMPfam Eukaryotic translation initiation factor 4E (eIF-4E) 1.6e-53
HMMPanther Eukaryotic translation initiation factor 4E (eIF-4E) 1.7e-73
superfamily Eukaryotic translation initiation factor 4E (eIF-4E) 1.3e-60
PatternScan Eukaryotic translation initiation factor 4E (eIF-4E), conserved site 0
Gene3D Eukaryotic translation initiation factor 4E (eIF-4E) 3.7e-59

See the detailed result >

AT5G18110.1

Model type
Protein coding
Short Description
novel cap-binding protein
Computational Description
novel cap-binding protein (NCBP); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040), Eukaryotic translation initiation factor 4E (eIF-4E), conserved site (InterPro:IPR019770); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4E (TAIR:AT4G18040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-13-E03 introduced

  • F22838 - rosette leaf::abnormal / cauline leaf::increased size / stem::abnormal / cauline leaf::epinastic / cauline leaf::abnormal

Mutant lines with disrupted or induced

2 mutant lines found