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  3. RAFL05-13-F06

RAFL05-13-F06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02565)

full reading [+] show sequence

Nucleotide sequence: RAFL05-13-F06 - full reading 
ACAATAAAAT AATAATTATT AGTATTACGA AGGGAAAAGG GAAATGGTCC 
GTACTAGTTG TCCGAACCCG AAGAAGCCCC AATCGCTGAT GCAACTGTCT 
AGGAGCCGCC ACGCTGCGAA GAAGCTCTAG GGTTTGTTCG TCTTCTTCCT 
CGGTTTCATC AGATGGTAAT CAAGATTGTT GACGGTGCTC TGAAGATCTG 
TTGACCTGCT CAGAGTTTGC TTAAAAAGTT TGAGAAAAAA TGGACGATGA 
TAATGGGCTC GAGCTCAGCT TGGGTCTTTC TTGTGGAGGA TCAACAGGAA 
AAGCTAAGGG TAACAATAAT AATAATGCTG GAAGCTCCTC AGAGAACTAC 
AGGGCAGAAG GAGGCGATAG AAGTGCTAAA GTGATTGATG ACTTTAAGAA 
CTTCCTGCAT CCAACTTCTC AAAGACCTGC AGAGCCGAGT TCTGGTTCTC 
AAAGAAGTGA TTCGGGTCAA CAGCCTCCAC AAAATTTCTT CAATGACCTC 
TCAAAAGCTC CTACAACTGA GGCTGAAGCT TCTACGAAAC CTTTGTGGGT 
GGAGGAGGAG TCACGGAAAG AAGCAGGGAA CAAAAGAAAG TTCGGGTTCC 
CGGGGATGAA TGATGATAAG AAAAAAGAGA AGGACTCGTC TCATGTTGAT 
ATGCATGAGA AGAAGACAAA AGCATCCCAT GTTTCAACTG CGACAGATGA 
AGGATCAACA GCTGAAAACG AAGATGTAGC AGAGTCTGAA GTAGGTGGTG 
GTTCTTCTTC CAACCACGCA AAGGAGGTGG TTCGTCCTCC TACTGATACA 
AACATTGTGG ACAACTTAAC TGGTCAAAGG AGGAGCAACC ATGGTGGATC 
TGGCACTGAA GAGTTTACAA TGCGCAACAT GAGTTACACC GTACCTTTCA 
CAGTTCATCC GCAAAATGTC GTCACTAGTA TGCCTTACTC TTTACCGACA 
AAAGAGTCTG GACAACACGC AGCAGCTACA AGTCTATTGC AGCCTAATGC 
TAATGCTGGA AATCTCCCGA TTATGTTCGG ATACTCACCA GTCCAGCTCC 
CTATGCTAGA TAAGGACGGT TCAGGAGGGA TTGTCGCACT TTCTCAATCT 
CCATTTGCTG GAAGAGTTCC ATCAAACTCA GCTACTGCAA AAGGCGAAGG 
CAAACAACCT GTTGCAGAAG AAGGTTCATC CGAGGATGCA TCAGAACGAC 
CAACGGGAGA CAACAGCAAC CTCAATACCG CTTTCTCTTT CGACTTTTCT 
GCCATAAAAC CTGGAATGGC AGCAGATGTG AAGTTTGGAG GATCCGGGGC 
ACGTCCCAAC TTACCGTGGG TCTCAACCAC TGGTTCAGGC CCACACGGAC 
GGACAATCTC AGGTGTCACA TACCGGTACA ACGCAAACCA GATCAAAATC 
GTATGCGCTT GCCACGGCTC GCACATGTCA CCGGAGGAGT TTGTACGGCA 
CGCAAGCGAG GAGTACGTTA GCCCAGAATC ATCCATGGGA ATGACTGCAG 
CGTCAGCTCA CACCTGAAAA GTCACCACCG GAAAAAAACA TGTCTGAAAT 
CTTGTAAACA AATGGAAGGG TTTGTAATGA GTTTCTTTTT GGAACATACA 
TTTTATTATG TTTAGTCGGA TCAAACTCTC AAGCCAAAGT TTTTTAACTG 
AGCTTTCTGT TATGTTGTTG TAATCTCTCT ACTTCATCAC AATTCCTTAT 
GTAATCCTCT TCTTTCCTTT TTGTTTTTTG GTTGAAAGGA AATTATATAT 
AAC

Gene models with high sequence identity

  1. AT4G28910.1 [+] show detail - novel interactor of JAZ
    E-value: 0; Score: 99.83

 

InterPro Scan Digest

See the detailed result >

AT4G28910.1

Model type
Protein coding
Short Description
novel interactor of JAZ
Computational Description
novel interactor of JAZ (NINJA); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: ABI five binding protein 3 (TAIR:AT3G29575.4); Has 317 Blast hits to 301 proteins in 73 species: Archae - 2; Bacteria - 15; Metazoa - 43; Fungi - 39; Plants - 175; Viruses - 3; Other Eukaryotes - 40 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-13-F06 introduced

  • F02702 - Specific phenotypes were NOT observed.
  • F12711 - Specific phenotypes were NOT observed.
  • F14519 - seed::increased size

Mutant lines with disrupted or induced

7 mutant lines found