1. Home
  2. Full-length cDNAs
  3. RAFL05-13-F11

RAFL05-13-F11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02566)

full reading [+] show sequence

Nucleotide sequence: RAFL05-13-F11 - full reading
GTGGAGAAGG AGAAGAAGGA TAAGGATGAT AACGGTAAGC GAAGTTTCCT 
CTTACTCTTC TTCTTCTTCA AACTTCGCGT CTCTGTCTCG TCTCAATCAC
AAATCATCTT CGAGATTGCG AAGCTCTTCT CTTTACAAAG GAAGCTTCTT
CTCTGTTTCG ACAAAGACCA GGAGGAACAC TTGTAAAGCC AAATCATGGA
ATCTCGGTCT TGTTATCAAC TCTAGAAGCT CTGAGGCTTC GGTTTTTGAT
CCGTTGGGGA TCAATCCAGA TGAAACTTCT GGTTTAAGTA GCATTTGGGA
AAGCTTTGTG AGTCTTTTGT CACCATCATT TGAAAGCTCT TCCGGTAACA
GGCGAGATAA GCCGTCTTCT GGTAGAGGCG TGGCAGCTGC TATTGAGGAC
AGTTCCATTG ATTTTGGAGA TTTCTTCAAA GGGCCATTGC CAGGGAAGTT
TCTGAAGCTT CTTGGGTTTT TAGCTCTCTC TCGGCTTGGA ATTTACATAC
CACTCGGCGG GGTTAATCGA GAAGCTTTTG TTGGAAATTT GGATCAGAAT
AGCATTTTGA GCACTTTGGA TACATTTTCT GGTGGAGGCA TAGGTAGACT
TGGTATATGT TCTCTCGGGA TTGTTCCTTT CATCAACGCT CAGATTGTGT
TTCAGCTTCT TGCTCAAGTC TATCCAAAGT TGCAAGATCT TCAGAAAAAA
GAAGGTGAAG CTGGTAGAAA AAAGATTCTT CAGTATACTA GATATGCTTC
AGTTGGTTTT GCGATAGTAC AAGCAATCGG ACAAGTGTTT TACCTTCGTC
CTTACGTTAA TGACTTCAGC ACGGAATGGG TTGTTTCTTC TGTTACGTTG
TTAACGCTTG GTTCTGTTCT CACTACATAT ATTGGAGAGA GAATCTCTGA
TCTGAAACTT GGAAATGGCA CTTCCCTATT GATTTTCACA AGTATCATCT
CTTACTTGCC TGCATCATTC GGTAGAACAA CAGCAGAGGC CTTACAGGAA
GGAAACTATA CTGGTCTTGG AACCATCGTT GTTTCATTTC TCCTCTTGGT
ACTCGGGATA GTATATGTTC AGGAAGCAGA GAGGAAAATT CCGCTCAATT
ATGCCTCGCG ATACACCAGC AAAGCTGGTG GGCTTCAGAA ATCTGCTTAT
CTTCCATTCA AGGTCAATAG TGCGGGAGTA ATGCCTATCA TATTCTCCAC
ATCATCTCTT GCTCTTCCTG CTACTTTAGC ACGATTTACC GGCATATCTG
CTTTGAAGAA TGTTGCTTTT GCTTTAACCC CTGGAGGTTC TTTCTATCTT
CCAACCAATA TACTTCTCAT AGCTTTCTTC AACTACTACT ACACTTTCTT
GCAACTTGAC CCGGACGACG TGAGTGAACA ATTAAAACGC CAAGGTGCAT
CAATCCCTCT AGTCCGACCT GGTAAAAGCA CTGCTCTCTT CATCAAAACC
GTCCTTGGCC GGATATCGGT TCTTGGTTCT GCATTTCTGG CTGTTCTAGC
TGCTGGTCCT GCTGTAGTCG AACAGATCAC TCACTTGACA GCATTCAGAG
GATTTGCAGG CACTTCTGTT CTGATCCTTG TCGGGTGTGC GACAGATACT
GCAAGAAAGG TTCAAGCAGA GATAATCTCG CAAAAGTACA AGAACATTGA
GTTTTACGAG CTTGACAAGT ATGATCCATG AACTGGACCT TCTGTTTTAC
ATATAATACC CATCAAACCA AGTTACTGTG TTCTCTTGTC ATAGATTGTA
ACAAATGTTT TAAACTTTGA TTAGTATATA ATGCACTTTT GG

Gene models with high sequence identity

  1. AT2G18710.1 [+] show detail - SECY homolog 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan SecY protein 3e-76
FPrintScan SecY protein 3e-76
FPrintScan SecY protein 3e-76
FPrintScan SecY protein 3e-76
FPrintScan SecY protein 3e-76
FPrintScan SecY protein 3e-76
FPrintScan SecY protein 3e-76
FPrintScan SecY protein 3e-76
FPrintScan SecY protein 3e-76
superfamily SecY protein 7.4e-89
PatternScan SecY protein 0
PatternScan SecY protein 0
HMMTigr SecY protein 1.2e-108
HMMPanther PROTEIN TRANSLOCASE SECY SUBUNIT 6.7e-175
HMMPanther SecY protein 6.7e-175
HMMPfam SecY protein 1.5e-90

See the detailed result >

AT2G18710.1

Model type
Protein coding
Short Description
SECY homolog 1
Curator Summary
Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid.
Computational Description
SECY homolog 1 (SCY1); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT2G31530.1); Has 9180 Blast hits to 9165 proteins in 2700 species: Archae - 72; Bacteria - 5385; Metazoa - 19; Fungi - 2; Plants - 102; Viruses - 0; Other Eukaryotes - 3600 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-13-F11 introduced

  • F15903 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::epinastic / cauline leaf::abnormal / whole plant::decreased height / seed::present in fewer numbers in organism / rosette leaf::desaturated green / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / stem::desaturated green / cauline leaf::desaturated green / whole plant::decreased height / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::abnormal

Mutant lines with disrupted or induced

1 mutant line founds