1. Home
  2. Full-length cDNAs
  3. RAFL05-13-J04

RAFL05-13-J04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02569)

full reading [+] show sequence

Nucleotide sequence: RAFL05-13-J04 - full reading 
ATCATCATCA GTACCATCTC CTCGTTTTGA TAAAAATCTC TGAATCTCTC 
CAAGCTCTCT TCTCATCAAA CCATGGATCC TTACAAGTAT CGTCCAGCTA 
GTTCTTACAA CTCTCCCTTC TTCACCACCA ACTCTGGTGC TCCTGTATGG 
AACAACAACT CCTCCATGAC CGTTGGACCC AGAGGTCCTA TCCTTCTTGA 
GGATTACCAT CTCGTTGAGA AGCTTGCCAA TTTCGACAGG GAACGGATTC 
CAGAGCGTGT GGTTCATGCC AGAGGAGCCA GTGCTAAAGG TTTCTTTGAG 
GTCACTCATG ATATCTCTAA CCTCACTTGT GCTGACTTTC TCCGAGCTCC 
CGGTGTTCAG ACTCCTGTCA TTGTCCGGTT CTCCACCGTT ATCCATGAGC 
GTGGAAGTCC CGAGACCTTG AGAGACCCTC GTGGTTTTGC AGTCAAGTTC 
TACACCAGAG AGGGGAACTT TGATCTTGTT GGAAACAACT TTCCTGTTTT 
CTTCATCCGC GATGGGATGA AGTTCCCTGA CATGGTCCAC GCTCTTAAGC 
CGAACCCAAA ATCTCACATC CAAGAGAACT GGAGAATCCT TGACTTCTTC 
TCCCACCACC CTGAAAGTTT GAACATGTTC ACTTTCCTCT TCGATGATAT 
CGGTATCCCA CAAGATTACA GGCACATGGA TGGTTCAGGT GTCAATACAT 
ACATGTTGAT CAACAAAGCT GGCAAAGCTC ACTACGTGAA GTTCCATTGG 
AAACCAACTT GTGGAGTCAA GTCTCTTTTG GAAGAAGATG CAATTCTTGT 
TGGAGGAACC AACCACAGTC ATGCGACTCA AGACTTGTAT GACTCTATAG 
CTGCTGGAAA CTACCCTGAA TGGAAGCTCT TTATCCAAAT CATTGATCCT 
GCTGATGAAG ACAAGTTCGA CTTTGACCCG CTCGATGTGA CCAAGACCTG 
GCCTGAGGAT ATCTTGCCTC TTCAACCTGT TGGACGTATG GTGTTGAACA 
AGAACATTGA CAACTTCTTT GCAGAGAATG AGCAACTTGC TTTCTGTCCT 
GCAATTATTG TCCCAGGGAT ACATTACTCA GATGATAAGC TGCTTCAAAC 
CCGTGTCTTC TCCTATGCCG ATACTCAGAG ACACCGTCTT GGACCAAACT 
ACCTTCAGCT GCCAGTCAAT GCTCCAAAAT GTGCTCACCA CAACAACCAC 
CATGAGGGAT TCATGAATTT CATGCACAGG GACGAGGAGG TTAACTACTT 
CCCGTCGAGG TATGACCAGG TTCGTCATGC TGAGAAGTAT CCAACTCCGC 
CTGCTGTCTG TTCTGGAAAA CGTGAGAGGT GCATTATTGA GAAAGAGAAC 
AACTTCAAGG AGCCTGGAGA GAGATACCGT ACCTTTACAC CAGAGAGGCA 
AGAACGATTC ATCCAGAGAT GGATTGATGC CCTATCCGAC CCACGCATCA 
CGCATGAAAT CCGCAGTATC TGGATCTCTT ACTGGTCTCA GGCTGATAAG 
TCTTTGGGAC AGAAGCTGGC AAGCCGTCTG AACGTGAGAC CAAGCATCTA 
AAACGAGTGA AAGAATTCTT GATTGGCCTT TCTGTGGTTG TTAATTAGCA 
GAGAAAAGAA AATGGGAAGA GATCAAAGTT GCGATAATAC AATCTTCATC 
ATGTGGATCT TCTGTGCTAT GTTATAATAG TATCTGTTTA AAGACCAAAA 
GAACCTTGTG TGTTGTTGTG TCTCTCGTTT ATCAGAATAA TACATTATAC 
ATTGAAGAT

Gene models with high sequence identity

  1. AT4G35090.1 [+] show detail - catalase 2
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
FPrintScan Catalase related subgroup 1.6e-81
FPrintScan Catalase related subgroup 1.6e-81
FPrintScan Catalase related subgroup 1.6e-81
FPrintScan Catalase related subgroup 1.6e-81
FPrintScan Catalase related subgroup 1.6e-81
FPrintScan Catalase related subgroup 1.6e-81
PatternScan Catalase 0
PatternScan Catalase 0
Gene3D Catalase, N-terminal 2.4e-208
superfamily Catalase-like domain, haem-dependent 8.2e-215
HMMPfam Catalase related subgroup 2.7e-182
HMMPfam Catalase-related immune responsive 2.4e-19
HMMPanther Catalase-like domain, haem-dependent 1.9e-285
ProfileScan Catalase, N-terminal 74.873

See the detailed result >

AT4G35090.1

Model type
Protein coding
Short Description
catalase 2
Curator Summary
Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2 sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene. Note that in Queval et al. (2007) Plant Journal, 52(4):640, SALK_057998 is named as cat2-1, SALK_076998 is named as cat2-2; in Bueso et al. (2007) Plant Journal, 52(6):1052, SALK_076998 is named as cat2-1. TAIR has adopted the nomenclature consistent with that in Bueso et al. (2007) after consultation with the authors: SALK_076998 (cat2-1), SALK_057998 (cat2-2).
Computational Description
catalase 2 (CAT2); FUNCTIONS IN: protein binding, catalase activity, cobalt ion binding; INVOLVED IN: in 10 processes; LOCATED IN: mitochondrion, cytosolic ribosome, stromule, peroxisome, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Catalase (InterPro:IPR002226), Catalase related subgroup (InterPro:IPR018028), Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 1 (TAIR:AT1G20630.1); Has 6114 Blast hits to 6094 proteins in 1849 species: Archae - 22; Bacteria - 4292; Metazoa - 675; Fungi - 546; Plants - 461; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-13-J04 introduced

  • F22812 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found