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  3. RAFL05-13-M17

RAFL05-13-M17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02576)

full reading [+] show sequence

Nucleotide sequence: RAFL05-13-M17 - full reading 
TGCTATCTTT GTCGCCGCCA AACCTCTCTC AGATTCTTCT TCTTCCTCGC 
AGATCGATTT TTTTTTGAAG CTAAATCTCA AAAATGGAGA ACGACGCAGG 
TCAGGTCACA GAGCTCTACA TTCCAAGGAA ATGCTCGGCA ACAAACAGAA 
TGATCACATC AAAGGATCAT GCTTCAGTTC AGCTTAACAT TGGTCATCTT 
GATGCTAATG GTCTCTACAC TGGCCAATTC ACCACTTTTG CTCTCTGCGG 
ATTTGTCCGT GCTCAGGGAG ACGCAGACAG TGGCGTGGAC AGGCTCTGGC 
AGAAGAAGAA GGTCGAAGCT AAACAACAGT GAGAGACAAT CTGACAATGT 
CATAAGCTCT TGTTTGTTTT TTGAGGTTTC GATTTATTAG CTATGTGGCT 
TTGTCATTGA ATTGAAAATG TTAGTTTCTC TTTATGCGAA TTCATGTTTT 
CGATTTTTCT GCTTTATTAA AGATAATTAT TAGGCTTTGA GGCCAAC

Gene models with high sequence identity

  1. AT3G53890.1 [+] show detail - Ribosomal protein S21e
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPIR Ribosomal protein S21e 3.8e-49
HMMPanther Ribosomal protein S21e 5.5e-45
PatternScan Ribosomal protein S21e, conserved site 0
HMMPfam Ribosomal protein S21e 5.2e-38
BlastProDom Ribosomal protein S21e 3e-23

See the detailed result >

AT3G53890.1

Model type
Protein coding
Short Description
Ribosomal protein S21e
Computational Description
Ribosomal protein S21e ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e (InterPro:IPR001931), Ribosomal protein S21e, conserved site (InterPro:IPR018279); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21e (TAIR:AT5G27700.1); Has 661 Blast hits to 661 proteins in 257 species: Archae - 0; Bacteria - 0; Metazoa - 294; Fungi - 137; Plants - 120; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-13-M17 introduced

  • F02705 - seed::increased size
  • F08721 - seed::increased size / seed::increased length
  • F09212 - Specific phenotypes were NOT observed.
  • F16041 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found