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Full-length cDNAs
RAFL05-13-O08

RAFL05-13-O08

RIKEN Arabidopsis Full-length cDNAs

GTCCTCCGCT TTTCCATTTT ACTCTTCTTG TATGTTTCTG TCTTCTTACT 
CAACTTTTGC TTCAGGCTTC GTCTCTTTTG CAATTTTTGA GTTAGCCAAG 
TGCTCAAGGG AGATACATAA TACCTGAAGA TGTCCAAGGC AAGTGATGCC 
GTCAGAGAAC CATTGGTGGA CAAGAATATG GCTGGATCAA AACCAGACCA 
GCCGTGGATG GTTTATCTCA GCACATTCGT TGCGGTCTGT GGTTCTTTTG 
CGTTCGGTTC TTGTGCGGGA TACTCTTCAC CTGCTCAGGC TGCAATTAGG 
AATGACCTTT CATTGACTAT AGCTGAGTTT TCACTCTTTG GTTCTTTACT 
AACTTTTGGC GCAATGATCG GTGCTATAAC AAGCGGGCCT ATAGCTGATT 
TAGTTGGAAG AAAGGGGGCG ATGAGAGTTT CCTCTGCATT TTGTGTAGTC 
GGGTGGCTAG CAATCATCTT TGCCAAGGGA GTAGTGGCTC TGGACCTTGG 
AAGACTGGCA ACGGGATATG GAATGGGAGC ATTTTCCTAT GTGGTGCCAA 
TCTTTATAGC AGAAATTGCA CCTAAAACTT TCAGAGGGGC TCTAACCACA 
CTGAACCAGA TTCTGATCTG CACTGGAGTG TCGGTTTCCT TCATCATAGG 
CACACTAGTG ACGTGGAGAG TCTTGGCATT AATAGGAATC ATCCCATGCG 
CTGCCTCCTT CCTTGGCCTC TTTTTTATCC CTGAGTCTCC AAGATGGCTG 
GCAAAAGTGG GGCGTGATAC GGAGTTTGAA GCTGCACTGA GGAAGCTCCG 
TGGGAAGAAG GCTGATATTT CGGAGGAGGC AGCAGAGATC CAGGATTATA 
TCGAAACTCT GGAAAGGCTA CCGAAAGCCA AGATGCTGGA TTTGTTTCAG 
AGGAGATACA TACGCTCTGT TCTTATAGCT TTCGGGTTGA TGGTGTTTCA 
GCAGTTTGGA GGAATCAACG GAATATGTTT CTACACAAGC TCGATATTTG 
AGCAAGCAGG TTTTCCCACA AGACTTGGGA TGATAATATA TGCTGTTCTT 
CAGGTGGTAA TCACTGCGCT TAATGCACCG ATAGTTGACA GAGCCGGAAG 
AAAACCATTG CTACTGGTTT CTGCAACAGG GTTAGTGATA GGCTGTTTGA 
TAGCAGCGGT TTCTTTCTAT CTCAAGGTTC ACGACATGGC GCACGAAGCA 
GTCCCAGTCC TGGCTGTTGT TGGTATAATG GTGTACATAG GATCGTTTTC 
AGCAGGAATG GGAGCAATGC CGTGGGTGGT CATGTCTGAG ATATTTCCCA 
TAAACATAAA AGGAGTAGCA GGAGGCATGG CGACGCTGGT GAACTGGTTT 
GGAGCGTGGG CTGTTTCTTA CACTTTCAAC TTCCTCATGT CCTGGAGCTC 
TTACGGAACT TTCCTCATTT ACGCTGCCAT CAACGCGCTG GCCATTGTCT 
TCGTCATTGC CATCGTGCCT GAGACAAAAG GGAAGACATT GGAGCAGATC 
CAAGCTATAG TCAATCCATA GCTCAAACAC TTCCTAGATG TTCGTTTCTA 
TTAGCCAGCT GGGACATAAA TTGCAATCTT GGATCTCTTT GCTTTTATGA 
TTCTTTACTG AGTTCAATTG TTATCACTCT CTCTATTTCT AATCTCTTCT 
TAATGAACTT TGGACTTCAA TTTGATGTTT TTCCAT

Gene models with high sequence identity

AT2G48020.2 [+] show detail - Major facilitator superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Sugar transporter, conserved site	0
superfamily	Major facilitator superfamily, general substrate transporter	6.6e-66
HMMPfam	General substrate transporter	3.4e-89
FPrintScan	Sugar/inositol transporter	1.6e-15
FPrintScan	Sugar/inositol transporter	1.6e-15
FPrintScan	Sugar/inositol transporter	1.6e-15
FPrintScan	Sugar/inositol transporter	1.6e-15
HMMPanther	SUGAR TRANSPORTER PLANT	5.2e-171
HMMPanther	SUGAR TRANSPORTER	5.2e-171
HMMTigr	Sugar/inositol transporter	6.4e-74
Coil	coiled-coil	0
ProfileScan	MFS	44.471

See the detailed result >

AT2G48020.2

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G18840.1); Has 32576 Blast hits to 32035 proteins in 2204 species: Archae - 531; Bacteria - 16009; Metazoa - 5272; Fungi - 6662; Plants - 2708; Viruses - 2; Other Eukaryotes - 1392 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL05-13-O08 introduced

F10845 - Specific phenotypes were NOT observed.
F14235 - Specific phenotypes were NOT observed.
F18747 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found